RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 BMI1P35226 326 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 PCP4P48539 62 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 HIST1H1AQ02539 215 aaPredicted RBP8.77□□□□□ -1.01
CUX1-202ENST00000292538 FOXE3Q13461 319 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 C11orf44Q8N8P7 122 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 FER1L6-AS1Q8NA97 138 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 SLC50A1Q9BRV3 221 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 PEF1Q9UBV8 284 aaKnown RBP8.77□□□□□ -1.01
CUX1-202ENST00000292538 LOC102724200A0A096LPH7 203 aaPredicted RBP8.77□□□□□ -1.01
CUX1-202ENST00000292538 FABP5P3A8MUU1 101 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 NDUFA4O00483 81 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 DUX3Q96PT4 197 aa8.77□□□□□ -1.01
CUX1-202ENST00000292538 HAX1O00165 279 aa8.76□□□□□ -1.01
CUX1-202ENST00000292538 NCR2O95944 276 aa8.76□□□□□ -1.01
CUX1-202ENST00000292538 DEFB136Q30KP8 78 aa8.76□□□□□ -1.01
CUX1-202ENST00000292538 C1orf194Q5T5A4 169 aa8.76□□□□□ -1.01
CUX1-202ENST00000292538 SYNJ2BPP57105 145 aa8.76□□□□□ -1.01
CUX1-202ENST00000292538 LOXL1Q08397 574 aaPredicted RBP8.76□□□□□ -1.01
CUX1-202ENST00000292538 C3orf79P0CE67 100 aa8.75□□□□□ -1.01
CUX1-202ENST00000292538 FAM106AQ4KMX7 169 aa8.75□□□□□ -1.01
CUX1-202ENST00000292538 PRSS3P2Q8NHM4 247 aa8.75□□□□□ -1.01
CUX1-202ENST00000292538 D6R8Y8 96 aa8.75□□□□□ -1.01
CUX1-202ENST00000292538 KIR3DS1Q14943 382 aa8.75□□□□□ -1.01
CUX1-202ENST00000292538 DAZ1Q9NQZ3 744 aaKnown RBP8.75□□□□□ -1.01
CUX1-202ENST00000292538 VPREB3Q9UKI3 123 aa8.75□□□□□ -1.01
CUX1-202ENST00000292538 TRBV6-1A0A0K0K1D8 114 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 FAM231BA6NCW3 169 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 IGLV1-40P01703 118 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 ZNF705AQ6ZN79 300 aaPredicted RBP8.74□□□□□ -1.01
CUX1-202ENST00000292538 LINC00173Q6ZV60 143 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 J3QLI3 93 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 CYB5R2Q6BCY4 276 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 OR10J6PQ8NGY7 276 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 VAMP8Q9BV40 100 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 UFC1Q9Y3C8 167 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 A0A087X0K7 114 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 LINC00614P0C842 121 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 RNASE4P34096 147 aaKnown RBP8.74□□□□□ -1.01
CUX1-202ENST00000292538 CRIP2P52943 208 aaPredicted RBP8.74□□□□□ -1.01
CUX1-202ENST00000292538 C18orf65Q6ZTR6 163 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 PMCHL2Q9BQD1 86 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 C11orf21Q9P2W6 132 aa8.74□□□□□ -1.01
CUX1-202ENST00000292538 TMEM190Q8WZ59 177 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 URB1-AS1Q96HZ7 61 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 U3KQE9 123 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 IGHV7-4-1A0A0J9YVY3 117 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 ZNF688P0C7X2 276 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 ESDP10768 282 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 PSMB8P28062 276 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 CKS2P33552 79 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 GPHB5Q86YW7 130 aa8.73□□□□□ -1.01
CUX1-202ENST00000292538 IGKV3D-20A0A0C4DH25 116 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 EVI2AP22794 236 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 IFI27P40305 119 aaPredicted RBP8.72□□□□□ -1.01
CUX1-202ENST00000292538 PRR9Q5T870 116 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 EBLN2Q6P2I7 272 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 C14orf144Q96I85 54 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 Q6YL49 198 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 FA2HQ7L5A8 372 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 UNC79Q9P2D8 2635 aa8.72□□□□□ -1.01
CUX1-202ENST00000292538 IGHV1-24A0A0C4DH33 117 aa8.71□□□□□ -1.01
CUX1-202ENST00000292538 H3BUA1 57 aa8.71□□□□□ -1.01
CUX1-202ENST00000292538 GAS8-AS1O95177 125 aa8.71□□□□□ -1.01
CUX1-202ENST00000292538 S100A4P26447 101 aaKnown RBP8.71□□□□□ -1.01
CUX1-202ENST00000292538 KLF5Q13887 457 aaPredicted RBP8.71□□□□□ -1.01
CUX1-202ENST00000292538 BATFQ16520 125 aa8.71□□□□□ -1.01
CUX1-202ENST00000292538 C9orf139Q6ZV77 190 aa8.71□□□□□ -1.01
CUX1-202ENST00000292538 OR10AG1Q8NH19 301 aa8.71□□□□□ -1.01
CUX1-202ENST00000292538 H3BVH4 76 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 LEPROTL1O95214 131 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 TCTAP57738 103 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 KLK9Q2XQG4 91 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 SPANXN1Q5VSR9 72 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 Q6AWC8 147 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 PRSS57Q6UWY2 283 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 PRELID3AQ96N28 172 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 SMPXQ9UHP9 88 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 KLK9Q9UKQ9 250 aa8.71□□□□□ -1.02
CUX1-202ENST00000292538 IGHV4OR15-8A0A075B7B6 117 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 A0A087WW49 117 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 A0A1W2PRX2 142 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 M0R381 172 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 GATA1P15976 413 aaPredicted RBP8.7□□□□□ -1.02
CUX1-202ENST00000292538 CFHR3Q02985 330 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 PSMG4Q5JS54 123 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 CHTOPQ9Y3Y2 248 aaKnown RBP8.7□□□□□ -1.02
CUX1-202ENST00000292538 GCN1Q92616 2671 aaKnown RBP8.7□□□□□ -1.02
CUX1-202ENST00000292538 TRAV26-2A0A0B4J265 109 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 MRPL51Q4U2R6 128 aaKnown RBP8.7□□□□□ -1.02
CUX1-202ENST00000292538 J3QKU1 62 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 COTL1Q14019 142 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 FAM104BQ5XKR9 115 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 DEFB104AQ8WTQ1 72 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 ZNF702PQ9H963 129 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 AP5S1Q9NUS5 200 aa8.7□□□□□ -1.02
CUX1-202ENST00000292538 HTN1P15515 57 aa8.69□□□□□ -1.02
CUX1-202ENST00000292538 RPS20P60866 119 aaKnown RBP8.69□□□□□ -1.02
CUX1-202ENST00000292538 SPATA45Q537H7 98 aa8.69□□□□□ -1.02
CUX1-202ENST00000292538 ORMDL3Q8N138 153 aa8.69□□□□□ -1.02
CUX1-202ENST00000292538 NIPBLQ6KC79 2804 aaeCLIP8.69□□□□□ -1.023e-10■■■■■ 76.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms