RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 FABP5P3A8MUU1 101 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 FAM74A4Q5TZK3 123 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 ZNF562Q6V9R5 426 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 SIGLEC15Q6ZMC9 328 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 ZFP36P26651 326 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 ATP5G2Q06055 141 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 LINC00574Q9H8X3 128 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 GAGE10A6NGK3 116 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 LINC01548A6NM66 108 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 H3BRN7 92 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 H3BUT2 72 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 K7EMI3 77 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 EGR2P11161 476 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 RASL11AQ6T310 242 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 SPATA12Q7Z6I5 190 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 CHCHD1Q96BP2 118 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 TTTY13Q9BZ97 58 aa9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 SOX21Q9Y651 276 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-211ENST00000556726 EPG5Q9HCE0 2579 aa9.53□□□□□ -0.88
CCDC88C-211ENST00000556726 PRAC2D3DTV9 90 aa9.53□□□□□ -0.88
CCDC88C-211ENST00000556726 ATP5J2P56134 94 aa9.53□□□□□ -0.88
CCDC88C-211ENST00000556726 IFI27L1Q96BM0 104 aa9.53□□□□□ -0.88
CCDC88C-211ENST00000556726 NPYP01303 97 aa9.53□□□□□ -0.88
CCDC88C-211ENST00000556726 NEU4Q8WWR8 484 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-211ENST00000556726 A1L4Q6 167 aa9.52□□□□□ -0.88
CCDC88C-211ENST00000556726 NDUFA3O95167 84 aa9.52□□□□□ -0.88
CCDC88C-211ENST00000556726 SIGLEC8Q9NYZ4 499 aa9.52□□□□□ -0.88
CCDC88C-211ENST00000556726 MRPL51Q4U2R6 128 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 GTSCR1Q86UQ5 136 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 ZNF502Q8TBZ5 544 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 PHLDA3Q9Y5J5 127 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 CRYGCP07315 174 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 GNLYP22749 145 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 MYOZ3Q8TDC0 251 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 EEF1AKMT3Q96AZ1 226 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 DUX5Q96PT3 197 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 PRR25Q96S07 402 aa9.52□□□□□ -0.89
CCDC88C-211ENST00000556726 C2orf70A6NJV1 201 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 HBDP02042 147 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 SMIM17P0DL12 118 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 ZNF492Q9P255 531 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 RNASE4P34096 147 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 ADORA2A-AS1P86434 159 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 PET117Q6UWS5 81 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 FANCD2OSQ96PS1 177 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 C7orf69Q9H7B7 122 aa9.51□□□□□ -0.89
CCDC88C-211ENST00000556726 MLST8Q9BVC4 326 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 ST20Q9HBF5 79 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 CCL25O15444 150 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 ESDP10768 282 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 EMP1P54849 157 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 COX11Q9Y6N1 276 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 CSMD1Q96PZ7 3565 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 F6UB75 175 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 ARL6IP6Q8N6S5 226 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 OR10J6PQ8NGY7 276 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 JKAMPQ9P055 326 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 DKK2Q9UBU2 259 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 KLF12Q9Y4X4 402 aa9.5□□□□□ -0.89
CCDC88C-211ENST00000556726 C19orf71A6NCJ1 209 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 ZNF80P51504 273 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 SCGB1D4Q6XE38 83 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 CTSGP08311 255 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 CRIP1P50238 77 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 FAM104BQ5XKR9 115 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 WIPF2Q8TF74 440 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 ZNF462Q96JM2 2506 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 HIVEP2P31629 2446 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 IGHV7-81A0A0B4J1V7 117 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 HAX1O00165 279 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 UCNP55089 124 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 ANKRD39Q53RE8 183 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 TMEM97Q5BJF2 176 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 Q8N976 141 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 TMEM158Q8WZ71 300 aa9.49□□□□□ -0.89
CCDC88C-211ENST00000556726 A0A1B0GXF2 115 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 H3BUX3 64 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 FOXE3Q13461 319 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 ACANP16112 2415 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 A6NDN8 102 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 CLEC2AQ6UVW9 174 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 NEGR1Q7Z3B1 354 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 CT83Q5H943 113 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 Q6AWC8 147 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 PCP2Q8IVA1 136 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 C14orf178Q8N769 122 aaPredicted RBP9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 TMEM14CQ9P0S9 112 aa9.48□□□□□ -0.89
CCDC88C-211ENST00000556726 PAX8Q06710 450 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 UBE2V1Q13404 147 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 KLF5Q13887 457 aaPredicted RBP9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 IGF2-ASQ6U949 168 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 NRGNQ92686 78 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 URB1-AS1Q96HZ7 61 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 RNF5Q99942 180 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 ZNF747Q9BV97 191 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 NHP2Q9NX24 153 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 JMJD1CQ15652 2540 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 M0R1W7 72 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 NPFFO15130 113 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms