RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 GPR132Q9UNW8 380 aa9.34□□□□□ -0.91
VPS29-209ENST00000551655 IGHV1OR15-1A0A075B7D0 117 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 IGHV3-16A0A0C4DH30 117 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 M0R3E3 92 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 PITX3O75364 302 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 TDRG1Q3Y452 100 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 SPANXN5Q5MJ07 72 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 TMEM229BQ8NBD8 167 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 SAT2Q96F10 170 aaPredicted RBP9.33□□□□□ -0.92
VPS29-209ENST00000551655 DNAJC30Q96LL9 226 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 FAM19A4Q96LR4 140 aa9.33□□□□□ -0.92
VPS29-209ENST00000551655 IGLC2P0DOY2 106 aa9.32□□□□□ -0.92
VPS29-209ENST00000551655 TAS2R19P59542 299 aa9.32□□□□□ -0.92
VPS29-209ENST00000551655 OPCMLQ14982 345 aa9.32□□□□□ -0.92
VPS29-209ENST00000551655 LINC00305Q7Z4B0 112 aa9.32□□□□□ -0.92
VPS29-209ENST00000551655 RPH3ALQ9UNE2 315 aa9.32□□□□□ -0.92
VPS29-209ENST00000551655 PXMP4Q9Y6I8 212 aa9.32□□□□□ -0.92
VPS29-209ENST00000551655 RNF222A6NCQ9 220 aa9.31□□□□□ -0.92
VPS29-209ENST00000551655 GPX1P07203 203 aa9.31□□□□□ -0.92
VPS29-209ENST00000551655 SLC38A11Q08AI6 406 aa9.31□□□□□ -0.92
VPS29-209ENST00000551655 MUC21Q5SSG8 566 aa9.31□□□□□ -0.92
VPS29-209ENST00000551655 DAZ4Q86SG3 579 aaKnown RBP9.31□□□□□ -0.92
VPS29-209ENST00000551655 AGPAT4-IT1Q9H0P7 198 aa9.31□□□□□ -0.92
VPS29-209ENST00000551655 DAZ3Q9NR90 486 aaKnown RBP9.31□□□□□ -0.92
VPS29-209ENST00000551655 FAM25AB3EWG3 89 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 FAM25CB3EWG5 89 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 FAM25GB3EWG6 89 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 ANKRD65E5RJM6 399 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 RRAS2P62070 204 aaPredicted RBP9.3□□□□□ -0.92
VPS29-209ENST00000551655 SURF2Q15527 256 aaPredicted RBP9.3□□□□□ -0.92
VPS29-209ENST00000551655 BPIFA4PQ86YQ2 179 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 ZFAND2AQ8N6M9 145 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 LINC00477Q96M19 166 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 PAXXQ9BUH6 204 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 KCNIP3Q9Y2W7 256 aa9.3□□□□□ -0.92
VPS29-209ENST00000551655 PANO1I0J062 215 aa9.29□□□□□ -0.92
VPS29-209ENST00000551655 Q8N976 141 aa9.29□□□□□ -0.92
VPS29-209ENST00000551655 TRAV8-3A0A0A6YYJ7 113 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 TRAV4A0A0B4J268 109 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 SYNGR2O43760 224 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 CRISP2P16562 243 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 SELENOTP62341 195 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 SH2D6Q7Z4S9 175 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 RASL10AQ92737 203 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 EXTL2Q9UBQ6 330 aa9.28□□□□□ -0.92
VPS29-209ENST00000551655 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.28□□□□□ -0.92
VPS29-209ENST00000551655 DISC1C4P0D8 188 aa9.27□□□□□ -0.93
VPS29-209ENST00000551655 RPP30P78346 268 aaKnown RBP9.27□□□□□ -0.93
VPS29-209ENST00000551655 OR4C5Q8NGB2 326 aa9.27□□□□□ -0.93
VPS29-209ENST00000551655 OR51S1Q8NGJ8 323 aa9.27□□□□□ -0.93
VPS29-209ENST00000551655 ATP6V0E2Q8NHE4 81 aa9.27□□□□□ -0.93
VPS29-209ENST00000551655 CIB3Q96Q77 187 aaPredicted RBP9.27□□□□□ -0.93
VPS29-209ENST00000551655 STRAPQ9Y3F4 350 aaKnown RBP9.27□□□□□ -0.93
VPS29-209ENST00000551655 IGKV2-40A0A087WW87 121 aaPredicted RBP9.26□□□□□ -0.93
VPS29-209ENST00000551655 MED6O75586 246 aa9.26□□□□□ -0.93
VPS29-209ENST00000551655 IGKV2D-40P01614 121 aaPredicted RBP9.26□□□□□ -0.93
VPS29-209ENST00000551655 GATA1P15976 413 aaPredicted RBP9.26□□□□□ -0.93
VPS29-209ENST00000551655 S100A7AQ86SG5 101 aa9.26□□□□□ -0.93
VPS29-209ENST00000551655 IGKV2D-24A0A075B6R9 120 aa9.25□□□□□ -0.93
VPS29-209ENST00000551655 COX7A2P2O60397 106 aa9.25□□□□□ -0.93
VPS29-209ENST00000551655 TMEM183BQ1AE95 376 aa9.25□□□□□ -0.93
VPS29-209ENST00000551655 TMEM183AQ8IXX5 376 aa9.25□□□□□ -0.93
VPS29-209ENST00000551655 SLC25A29Q8N8R3 303 aa9.25□□□□□ -0.93
VPS29-209ENST00000551655 RAB2BQ8WUD1 216 aa9.25□□□□□ -0.93
VPS29-209ENST00000551655 AGPAT2O15120 278 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 PFN1P07737 140 aaKnown RBP9.24□□□□□ -0.93
VPS29-209ENST00000551655 NCS1P62166 190 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 Q8TAT8 98 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 YIPF6Q96EC8 236 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 SRRQ9GZT4 340 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 DPH3P1Q9H4G8 78 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 RAB26Q9ULW5 256 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 RNF24Q9Y225 148 aa9.24□□□□□ -0.93
VPS29-209ENST00000551655 K7EPK0 472 aa9.23□□□□□ -0.93
VPS29-209ENST00000551655 SRPXP78539 464 aa9.23□□□□□ -0.93
VPS29-209ENST00000551655 EXOC3-AS1Q8N2X6 119 aa9.23□□□□□ -0.93
VPS29-209ENST00000551655 LINC01600Q96MT4 127 aa9.23□□□□□ -0.93
VPS29-209ENST00000551655 SOSTQ9BQB4 213 aa9.23□□□□□ -0.93
VPS29-209ENST00000551655 GGTLC3B5MD39 225 aa9.22□□□□□ -0.93
VPS29-209ENST00000551655 GOSR2O14653 212 aa9.22□□□□□ -0.93
VPS29-209ENST00000551655 NDUFB4O95168 129 aa9.22□□□□□ -0.93
VPS29-209ENST00000551655 C4orf46Q504U0 113 aa9.22□□□□□ -0.93
VPS29-209ENST00000551655 C10orf113Q5VZT2 155 aa9.22□□□□□ -0.93
VPS29-209ENST00000551655 CLVS1Q8IUQ0 354 aaPredicted RBP9.22□□□□□ -0.93
VPS29-209ENST00000551655 MRPL53Q96EL3 112 aaKnown RBP9.22□□□□□ -0.93
VPS29-209ENST00000551655 SPXQ9BT56 116 aa9.22□□□□□ -0.93
VPS29-209ENST00000551655 GTSF1LQ9H1H1 148 aa9.22□□□□□ -0.93
VPS29-209ENST00000551655 CCDC59Q9P031 241 aaKnown RBP9.22□□□□□ -0.93
VPS29-209ENST00000551655 TRBV19A0A075B6N1 114 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 IGHV3-73A0A0B4J1V6 119 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 AKAIN1P0CW23 69 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 ANXA3P12429 323 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 UBE2MP61081 183 aaKnown RBP9.21□□□□□ -0.94
VPS29-209ENST00000551655 VBP1P61758 197 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 POLR2GP62487 172 aaKnown RBP eCLIP9.21□□□□□ -0.94
VPS29-209ENST00000551655 GUK1Q16774 197 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 TMEM78Q5T7P6 136 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 PXDC1Q5TGL8 231 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 ZNF546Q86UE3 836 aa9.21□□□□□ -0.94
VPS29-209ENST00000551655 PRRT1Q99946 306 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms