RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 GAGE12JA6NER3 117 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 CFDP00746 253 aaPredicted RBP3.82□□□□□ -1.8
CLIP1-217ENST00000543205 IGLV1-51P01701 117 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 C8orf88P0DMB2 117 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 LYZP61626 148 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 EGFEM1PQ0D2K5 195 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 CLINT1Q14677 625 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 DEFB114Q30KQ6 69 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 PDZD11Q5EBL8 140 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 KPRPQ5T749 579 aaPredicted RBP3.82□□□□□ -1.8
CLIP1-217ENST00000543205 CYP2G1PQ6ZSU1 146 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 SMIM15Q7Z3B0 74 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 SLC51BQ86UW2 128 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 OR5C1Q8NGR4 320 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 ZNF414Q96IQ9 312 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 RHPN1-AS1Q9BWJ2 59 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 MLXQ9UH92 298 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 SMPXQ9UHP9 88 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 RABAC1Q9UI14 185 aa3.82□□□□□ -1.8
CLIP1-217ENST00000543205 TRRAPQ9Y4A5 3859 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 IGHV3OR16-13A0A075B7E8 117 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 FXYD6-FXYD2A0A087WZ82 144 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 IGHV3-74A0A0B4J1X5 117 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 UBE2L5PA0A1B0GUS4 154 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 WI2-2373I1.2A0A1W2PRP0 233 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 C4BPBP20851 252 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 FGF7P21781 194 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 CRYBB3P26998 211 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 S100A7P31151 101 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 KRTAP10-11P60412 298 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 SELENOTP62341 195 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 GUCA2BQ16661 112 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 Q5BKY6 102 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 SUMO4Q6EEV6 95 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 LAMTOR1Q6IAA8 161 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 ZNF256Q9Y2P7 627 aaPredicted RBP3.81□□□□□ -1.8
CLIP1-217ENST00000543205 HSPB11Q9Y547 144 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 SELENOKQ9Y6D0 94 aa3.81□□□□□ -1.8
CLIP1-217ENST00000543205 IGHV3-66A0A0C4DH42 116 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 AGPAT2O15120 278 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 GCGP01275 180 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 CD5P06127 495 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 LINC00869P0C866 280 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 RPL35AP18077 110 aaKnown RBP3.8□□□□□ -1.8
CLIP1-217ENST00000543205 ORM2P19652 201 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 GATA2P23769 480 aaPredicted RBP3.8□□□□□ -1.8
CLIP1-217ENST00000543205 EIF2B2P49770 351 aaKnown RBP3.8□□□□□ -1.8
CLIP1-217ENST00000543205 SCGB1C1Q8TD33 95 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 MGST2Q99735 147 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 SMIM3Q9BZL3 60 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 VSIRQ9H7M9 311 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 VWFP04275 2813 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 IZUMO1RA6ND01 250 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 C17orf112F2Z3M2 114 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 BUB3O43684 328 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 HYPMO75409 117 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 PRB2P02812 416 aaPredicted RBP3.8□□□□□ -1.8
CLIP1-217ENST00000543205 OR5G3P0C626 314 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 AP2S1P53680 142 aaPredicted RBP3.8□□□□□ -1.8
CLIP1-217ENST00000543205 PXDC1Q5TGL8 231 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 TCF24Q7RTU0 167 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 GTSCR1Q86UQ5 136 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 CBLN2Q8IUK8 224 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 TMEM61Q8N0U2 210 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 ZNF709Q8N972 641 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 AQP10Q96PS8 301 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 ARL6Q9H0F7 186 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 DOK5Q9P104 306 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 HIGD1AQ9Y241 93 aa3.8□□□□□ -1.8
CLIP1-217ENST00000543205 NOTCH3Q9UM47 2321 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 IGKV3-7A0A075B6H7 116 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 DNASE2O00115 360 aaPredicted RBP3.79□□□□□ -1.8
CLIP1-217ENST00000543205 ARPC5O15511 151 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 COX7A2P2O60397 106 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 SNAPINO95295 136 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 FRMD6-AS1P0C7T7 363 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 M6PRP20645 277 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 RPL29P47914 159 aaKnown RBP3.79□□□□□ -1.8
CLIP1-217ENST00000543205 MIC13Q5XKP0 118 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 GGTLC1Q9BX51 225 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 NPCDR1Q9BY65 106 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 WDR61Q9GZS3 305 aaKnown RBP3.79□□□□□ -1.8
CLIP1-217ENST00000543205 KCNIP2Q9NS61 270 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 TNFSF18Q9UNG2 199 aa3.79□□□□□ -1.8
CLIP1-217ENST00000543205 PRKDCP78527 4128 aaKnown RBP3.79□□□□□ -1.8
CLIP1-217ENST00000543205 TINCRA0A1B0GVN0 87 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 OR4C46A6NHA9 309 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 GAGE7O76087 117 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 TYMSP04818 313 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 GAGE12FP0CL80 117 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 GAGE12GP0CL81 117 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 GAGE12IP0CL82 117 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 TFPI2P48307 235 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 RAB4BP61018 213 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 GAGE1Q13065 139 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 GAGE4Q13068 117 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 ZNF266Q14584 549 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 KRTAP15-1Q3LI76 137 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 DEFB121Q5J5C9 76 aa3.78□□□□□ -1.8
CLIP1-217ENST00000543205 C1orf194Q5T5A4 169 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms