RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 HIST1H2BAQ96A08 127 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 RPUSD4Q96CM3 377 aaKnown RBP5.52□□□□□ -1.53
CD44-228ENST00000528455 EIF5A2Q9GZV4 153 aaKnown RBP5.52□□□□□ -1.53
CD44-228ENST00000528455 EPDR1Q9UM22 224 aa5.52□□□□□ -1.53
CD44-228ENST00000528455 YTHDF2Q9Y5A9 579 aaKnown RBP5.52□□□□□ -1.53
CD44-228ENST00000528455 IGKV3-7A0A075B6H7 116 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 TRAV8-2A0A0B4J237 113 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 LOC102723971A0A1B0GUV8 181 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 SERTM2A0A1B0GWG4 89 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 RBAKDNA6NC62 111 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 IZUMO1RA6ND01 250 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 FBLL1A6NHQ2 334 aaKnown RBP5.51□□□□□ -1.53
CD44-228ENST00000528455 C11orf94C9JXX5 98 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 S100A9P06702 114 aaKnown RBP5.51□□□□□ -1.53
CD44-228ENST00000528455 SNRPCP09234 159 aaKnown RBP5.51□□□□□ -1.53
CD44-228ENST00000528455 BCL2P10415 239 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 UBE2G2P60604 165 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 MEF2BQ02080 365 aaPredicted RBP5.51□□□□□ -1.53
CD44-228ENST00000528455 HAGHQ16775 308 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 KPRPQ5T749 579 aaPredicted RBP5.51□□□□□ -1.53
CD44-228ENST00000528455 UQCC3Q6UW78 93 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 EXOC3-AS1Q8N2X6 119 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 C5orf17Q8NAS9 161 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 CMTM2Q8TAZ6 248 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 LINC00477Q96M19 166 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 RARRES2Q99969 163 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 KLF12Q9Y4X4 402 aa5.51□□□□□ -1.53
CD44-228ENST00000528455 PRKDCP78527 4128 aaKnown RBP5.5□□□□□ -1.53
CD44-228ENST00000528455 TMEM250H0YL14 139 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 H3BTX0 84 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 K7EQM0 130 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 SLC17A3O00476 420 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 SLC25A5P05141 298 aaKnown RBP5.5□□□□□ -1.53
CD44-228ENST00000528455 CD81P60033 236 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 EGFEM1PQ0D2K5 195 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 GUCA2BQ16661 112 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 LINC00052Q96N35 136 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 MLST8Q9BVC4 326 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 PPP1R14DQ9NXH3 145 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 SELENOKQ9Y6D0 94 aa5.5□□□□□ -1.53
CD44-228ENST00000528455 ZNF705FA8MVS1 300 aaPredicted RBP5.49□□□□□ -1.53
CD44-228ENST00000528455 GGTLC3B5MD39 225 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 TCRAP04437 139 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 SRP19P09132 144 aaKnown RBP5.49□□□□□ -1.53
CD44-228ENST00000528455 ATP5G3P48201 142 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 TFPI2P48307 235 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 FAM74A3Q4VXF1 159 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 EBLN2Q6P2I7 272 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 C9orf47Q6ZRZ4 202 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 ATG101Q9BSB4 218 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 SLC35B3Q9H1N7 401 aa5.49□□□□□ -1.53
CD44-228ENST00000528455 DNAH3Q8TD57 4116 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 TRBV7-9A0A0J9YWB2 115 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 TRBV6-1A0A0K0K1D8 114 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 OR11H12B2RN74 326 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 M0R3E3 92 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 DUSP14O95147 198 aaKnown RBP5.48□□□□□ -1.53
CD44-228ENST00000528455 ZNF688P0C7X2 276 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 HLA-DMBP28068 263 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 TAS2R60P59551 318 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 DEFB131AP59861 70 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 TMEM183BQ1AE95 376 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 PSMG4Q5JS54 123 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 FOXI2Q6ZQN5 318 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 GTSCR1Q86UQ5 136 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 FAM24BQ8N5W8 94 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 RNF182Q8N6D2 247 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 CYB561D1Q8N8Q1 229 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 ZNF738Q8NE65 137 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 OR8A1Q8NGG7 326 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 OR10J6PQ8NGY7 276 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 C11orf52Q96A22 123 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 SAV1Q9H4B6 383 aaPredicted RBP5.48□□□□□ -1.53
CD44-228ENST00000528455 LENEPQ9Y5L5 61 aa5.48□□□□□ -1.53
CD44-228ENST00000528455 A0A0J9YX75 114 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 C9JQL5 133 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 PRAC2D3DTV9 90 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 PEX7O00628 323 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 PRB2P02812 416 aaPredicted RBP5.47□□□□□ -1.53
CD44-228ENST00000528455 CNN1P51911 297 aaKnown RBP5.47□□□□□ -1.53
CD44-228ENST00000528455 SAPCD1Q5SSQ6 148 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 COMMD7Q86VX2 200 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 TMEM75Q8N9X5 138 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 MRAPQ8TCY5 172 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 C2CD4CQ8TF44 421 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 FMC1Q96HJ9 113 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 AGPAT4-IT1Q9H0P7 198 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 MAP6D1Q9H9H5 199 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 TREM1Q9NP99 234 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 ZFP30Q9Y2G7 519 aa5.47□□□□□ -1.53
CD44-228ENST00000528455 TMEM218A2RU14 115 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 A8MTW9 85 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 H3BMM0 161 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 IGLV2-11P01706 119 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 CD7P09564 240 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 ZNF138P52744 262 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 FLI1Q01543 452 aaPredicted RBP5.46□□□□□ -1.54
CD44-228ENST00000528455 ODF3L2Q3SX64 289 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 SOHLH1Q5JUK2 328 aa5.46□□□□□ -1.54
CD44-228ENST00000528455 TMEM78Q5T7P6 136 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms