RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 GAGE2EQ4V326 116 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 GAGE2DQ9UEU5 116 aa9.75□□□□□ -0.85
CCDC88A-207ENST00000436346 PRIMA1Q86XR5 153 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 TMEM75Q8N9X5 138 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 LAMTOR2Q9Y2Q5 125 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 C5orf63A6NC05 138 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 IGKV1-5P01602 117 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 TCTEX1D4Q5JR98 221 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 DKK4Q9UBT3 224 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNF625Q96I27 306 aaPredicted RBP9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 ESDP10768 282 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 A0A1W2PPI3 338 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 CLPSL2Q6UWE3 100 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 SNHG12Q9BXW3 62 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 CFHR2P36980 270 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 HSD52Q0P140 79 aa9.74□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNF462Q96JM2 2506 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 TMEM158Q8WZ71 300 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 VWC2Q2TAL6 325 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNF479Q96JC4 524 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 TMEM14BQ9NUH8 114 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 ANAPC10Q9UM13 185 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 TRPT1Q86TN4 253 aaKnown RBP9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 LYPD1Q8N2G4 141 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 RPRMLQ8N4K4 120 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 SHANK2-AS3Q9BTD1 123 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 TRAV12-2A0A075B6T6 113 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 PRTN3P24158 256 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 ID3Q02535 119 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 GUSBP1Q15486 140 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 Q86TA4 180 aa9.73□□□□□ -0.85
CCDC88A-207ENST00000436346 C22orf46C9J442 243 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 NTF4P34130 210 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 ZNF581Q9P0T4 197 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 J3QLI3 93 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 NMSQ5H8A3 153 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 IGHG3P01860 377 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 ATRAIDQ6UW56 229 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 MCRIP2Q9BUT9 160 aaKnown RBP9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 CR1LQ2VPA4 569 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 GAGE2AQ6NT46 116 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 RMI2Q96E14 147 aa9.72□□□□□ -0.85
CCDC88A-207ENST00000436346 TRAV1-1A0A0B4J248 108 aa9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 G3V318 75 aa9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 I3L3M4 83 aa9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 EP400Q96L91 3159 aa9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 H0YIZ8 118 aa9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 C8orf86Q6ZUL3 223 aa9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 ANXA2RQ3ZCQ2 193 aa9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 C17orf82Q86X59 251 aaPredicted RBP9.71□□□□□ -0.85
CCDC88A-207ENST00000436346 C5orf24Q7Z6I8 188 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE12JA6NER3 117 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE1Q13065 139 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE4Q13068 117 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE5Q13069 117 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 C2orf82Q6UX34 121 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 REG4Q9BYZ8 158 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 LIME1Q9H400 295 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 AMN1Q8IY45 258 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 TRBV6-6A0A0A6YYG2 114 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 LINC01551Q86U37 167 aa9.71□□□□□ -0.86
CCDC88A-207ENST00000436346 HOXB4P17483 251 aaPredicted RBP9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 IGF2BP2-AS1Q96M15 143 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 TMEM126AQ9H061 195 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 WDR83OSQ9Y284 106 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 PKD1L2Q7Z442 2459 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 RFNGQ9Y644 331 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 TRAV8-3A0A0A6YYJ7 113 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 KNCNA6PVL3 124 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 PFN1P07737 140 aaKnown RBP9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE12BA1L429 117 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE7O76087 117 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE12FP0CL80 117 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE12GP0CL81 117 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE12IP0CL82 117 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 CDKN1BP46527 198 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 hDV102S1A0JD36 115 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 ZFAND6Q6FIF0 208 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 CEP295Q9C0D2 2601 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 C15orf62A8K5M9 175 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 RNASE2P10153 161 aaKnown RBP9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 HGFACQ04756 655 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 TSSC4Q9Y5U2 329 aaPredicted RBP9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 A0A087X0K7 114 aa9.7□□□□□ -0.86
CCDC88A-207ENST00000436346 POLQO75417 2590 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 TP53TG1Q9Y2A0 90 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 LY6G5BQ8NDX9 201 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 NDUFB8O95169 186 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 MST1LQ2TV78 715 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 IGFL3Q6UXB1 125 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 TMEM14EPQ6UXP3 125 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 KLHDC3Q9BQ90 382 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 A0A096LPF7 62 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 PMVKQ15126 192 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 TNFRSF6BO95407 300 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 ZNF833PQ6ZTB9 187 aa9.69□□□□□ -0.86
CCDC88A-207ENST00000436346 HIST1H2BLQ99880 126 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 TMEM242Q9NWH2 141 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 PAX9P55771 341 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 Q8TCH9 128 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms