RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LAIR2Q6ISS4 152 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 STPG2Q8N412 459 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 TMEM242Q9NWH2 141 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 IGLV9-49A0A0B4J1Y8 123 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 IZUMO1RA6ND01 250 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 IGF1P05019 195 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 HIST2H2BCQ6DN03 193 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 MRPS18CQ9Y3D5 142 aaKnown RBP3.78□□□□□ -1.8
SCN1A-202ENST00000375405 MAST2Q6P0Q8 1798 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 SPART-AS1P0CW21 52 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 GAFA1Q96PS6 74 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 RHPN1-AS1Q9BWJ2 59 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 IMUPQ9GZP8 106 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 CRYBG1Q9Y4K1 1723 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 A0A0B4J2E0 115 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 IGHV7-4-1A0A0J9YVY3 117 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 A0A1B0GX12 115 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 I3L3M4 83 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 HRKO00198 91 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 ELANEP08246 267 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 LIMS1P48059 325 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 TFF3Q07654 80 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 VN1R4Q7Z5H5 301 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 ODF3L1Q8IXM7 274 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 CRYGNQ8WXF5 182 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 RLFQ13129 1914 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 TCRBV5S1A1TA0A578 114 aa3.78□□□□□ -1.81
SCN1A-202ENST00000375405 ERVH48-1M5A8F1 160 aa3.78□□□□□ -1.81
SCN1A-202ENST00000375405 C14orf177Q52M58 125 aa3.78□□□□□ -1.81
SCN1A-202ENST00000375405 TMEM61Q8N0U2 210 aa3.78□□□□□ -1.81
SCN1A-202ENST00000375405 CARD19Q96LW7 228 aa3.78□□□□□ -1.81
SCN1A-202ENST00000375405 DEPPQ9NTK1 212 aa3.78□□□□□ -1.81
SCN1A-202ENST00000375405 K7EMT4 169 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 ZFP36P26651 326 aaKnown RBP3.77□□□□□ -1.81
SCN1A-202ENST00000375405 ADAMTSL5Q6ZMM2 481 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 IGLV3-10A0A075B6K4 115 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 LOC101059948A0A1B0GTJ6 334 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 HSD52Q0P140 79 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 TP53TG1Q9Y2A0 90 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 TJP1Q07157 1748 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 C17orf100A8MU93 164 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 PYYP10082 97 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 MINOS1Q5TGZ0 78 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 PVRIGQ6DKI7 326 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 RNF144BQ7Z419 303 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 C2CD3Q4AC94 2353 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 SSC5DA1L4H1 1573 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 PLA2G10O15496 165 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 MRPL23Q16540 153 aaKnown RBP3.77□□□□□ -1.81
SCN1A-202ENST00000375405 FAM222AQ5U5X8 452 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 SPINT4Q6UDR6 99 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 FAM19A1Q7Z5A9 133 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 SPACA3Q8IXA5 215 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 WBP1Q96G27 269 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 M0R1W7 72 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 OVOL3O00110 214 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 COX7A2LO14548 114 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 MT-ATP8P03928 68 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 TSSC4Q9Y5U2 329 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-202ENST00000375405 TICRRQ7Z2Z1 1910 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 IGLV3-16A0A075B6K0 115 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 LOC105371267A0A1B0GV96 52 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 CIRBP-AS1Q8TBR5 109 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 TMEM133Q9H2Q1 129 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 VPREB3Q9UKI3 123 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 SCN10AQ9Y5Y9 1956 aa3.77□□□□□ -1.81
SCN1A-202ENST00000375405 GUSBP1Q15486 140 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 CD300LDQ6UXZ3 194 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 USMG5Q96IX5 58 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 RIF1Q5UIP0 2472 aaKnown RBP3.76□□□□□ -1.81
SCN1A-202ENST00000375405 LINC01549A6NIU2 74 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 C9JQL5 133 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 KLK8O60259 260 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 GP9P14770 177 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 Q0VFX4 171 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 BVES-AS1Q5T3Y7 98 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 Q86TA4 180 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 C1QTNF5Q9BXJ0 243 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 FAM60AQ9NP50 221 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 KLF2Q9Y5W3 355 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-202ENST00000375405 TOPAZ1Q8N9V7 1692 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 A0A1W2PQD3 144 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 CCL24O00175 119 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 C8orf86Q6ZUL3 223 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 MSRB3Q8IXL7 192 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 EXPH5Q8NEV8 1989 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 BRCA1P38398 1863 aaKnown RBP3.76□□□□□ -1.81
SCN1A-202ENST00000375405 BPESC1Q9GZL8 116 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 PPDPFQ9H3Y8 114 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 DAZ1Q9NQZ3 744 aaKnown RBP3.76□□□□□ -1.81
SCN1A-202ENST00000375405 RFPL3SP0C7P2 107 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 EFNA4P52798 201 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 Q5BKY6 102 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 ZNF721Q8TF20 911 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 TMEM14BQ9NUH8 114 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 FLG2Q5D862 2391 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-202ENST00000375405 FOXS1O43638 330 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 TMEM30BQ3MIR4 351 aa3.76□□□□□ -1.81
SCN1A-202ENST00000375405 TRAV9-1A0A075B6T8 112 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 C17orf98A8MV24 154 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms