RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LINC00052Q96N35 136 aa11.5□□□□□ -0.57
TRIM28-209ENST00000597423 SPAG8Q99932 426 aaPredicted RBP11.5□□□□□ -0.57
TRIM28-209ENST00000597423 SEC11CQ9BY50 192 aa11.5□□□□□ -0.57
TRIM28-209ENST00000597423 SCO2A0A1W2PP80 73 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 OR4C46A6NHA9 309 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 ZNF727A8MUV8 499 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 TCRAP04437 139 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 CD33P20138 364 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 TAS2R60P59551 318 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 CD300EQ496F6 205 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-209ENST00000597423 C9orf66Q5T8R8 295 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 ATRQ13535 2644 aa11.49□□□□□ -0.57
TRIM28-209ENST00000597423 TRAV8-2A0A0B4J237 113 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 DIRC3C9JPN6 131 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 K7EQG2 157 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 SOCS3O14543 225 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 ATP6V1G1O75348 118 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 TFPI2P48307 235 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 UBE2G1P62253 170 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 ZNF674Q2M3X9 581 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 LURAP1LQ8IV03 231 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 ZNF738Q8NE65 137 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 WFDC9Q8NEX5 89 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 DCANP1Q8TF63 244 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 FMC1Q96HJ9 113 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 SMIM7Q9BQ49 75 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 NIPSNAP3BQ9BS92 247 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 GPR61Q9BZJ8 451 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 RPH3ALQ9UNE2 315 aa11.48□□□□□ -0.57
TRIM28-209ENST00000597423 GUCA2BQ16661 112 aa11.47□□□□□ -0.57
TRIM28-209ENST00000597423 TMEM241Q24JQ0 296 aa11.47□□□□□ -0.57
TRIM28-209ENST00000597423 IGFL4Q6B9Z1 124 aa11.47□□□□□ -0.57
TRIM28-209ENST00000597423 GOLT1AQ6ZVE7 132 aa11.47□□□□□ -0.57
TRIM28-209ENST00000597423 TMEM61Q8N0U2 210 aa11.47□□□□□ -0.57
TRIM28-209ENST00000597423 PARLQ9H300 379 aa11.47□□□□□ -0.57
TRIM28-209ENST00000597423 KLF12Q9Y4X4 402 aa11.47□□□□□ -0.57
TRIM28-209ENST00000597423 RBAKDNA6NC62 111 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 M0R3E3 92 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 IGLV1-51P01701 117 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 RPL35P42766 123 aaKnown RBP11.46□□□□□ -0.57
TRIM28-209ENST00000597423 GNG5P63218 68 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 TMEM183BQ1AE95 376 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 RNF182Q8N6D2 247 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 OR10J6PQ8NGY7 276 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 C2CD4CQ8TF44 421 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 SELENOKQ9Y6D0 94 aa11.46□□□□□ -0.57
TRIM28-209ENST00000597423 TRBV6-1A0A0K0K1D8 114 aa11.45□□□□□ -0.58
TRIM28-209ENST00000597423 GNG4P50150 75 aa11.45□□□□□ -0.58
TRIM28-209ENST00000597423 RIPPLY3P57055 190 aa11.45□□□□□ -0.58
TRIM28-209ENST00000597423 C10orf91Q5T1B1 145 aa11.45□□□□□ -0.58
TRIM28-209ENST00000597423 TMEM75Q8N9X5 138 aa11.45□□□□□ -0.58
TRIM28-209ENST00000597423 NAT8Q9UHE5 227 aa11.45□□□□□ -0.58
TRIM28-209ENST00000597423 CARHSP1Q9Y2V2 147 aaKnown RBP11.45□□□□□ -0.58
TRIM28-209ENST00000597423 ZNF705FA8MVS1 300 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-209ENST00000597423 C9JCJ5 164 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 HLA-DMBP28068 263 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 PNRC1Q12796 327 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-209ENST00000597423 SAPCD1Q5SSQ6 148 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 EBLN2Q6P2I7 272 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 SVBPQ8N300 66 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 TVP23CQ96ET8 276 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 LINC00477Q96M19 166 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 ZFP30Q9Y2G7 519 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 LY96Q9Y6Y9 160 aa11.44□□□□□ -0.58
TRIM28-209ENST00000597423 APOC3P02656 99 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 ZNF688P0C7X2 276 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 FLI1Q01543 452 aaPredicted RBP11.43□□□□□ -0.58
TRIM28-209ENST00000597423 PSMG4Q5JS54 123 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 TMEM78Q5T7P6 136 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 BAGE2Q86Y30 109 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 SMIM12Q96EX1 92 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 C20orf173Q96LM9 149 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 NDFIP1Q9BT67 221 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 BIN3Q9NQY0 253 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 ZMAT5Q9UDW3 170 aaKnown RBP11.43□□□□□ -0.58
TRIM28-209ENST00000597423 PSG8Q9UQ74 426 aa11.43□□□□□ -0.58
TRIM28-209ENST00000597423 TRAV34A0A0B4J273 112 aa11.42□□□□□ -0.58
TRIM28-209ENST00000597423 DUSP14O95147 198 aaKnown RBP11.42□□□□□ -0.58
TRIM28-209ENST00000597423 C9orf47Q6ZRZ4 202 aa11.42□□□□□ -0.58
TRIM28-209ENST00000597423 LINC00479Q96M42 142 aa11.42□□□□□ -0.58
TRIM28-209ENST00000597423 IGKV2-40A0A087WW87 121 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-209ENST00000597423 SNAPINO95295 136 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 IGKV2D-40P01614 121 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-209ENST00000597423 CENPWQ5EE01 88 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 PRR31Q5SQ13 230 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 PRNTQ86SH4 94 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 OR8A1Q8NGG7 326 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 DERL1Q9BUN8 251 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 SDF2L1Q9HCN8 221 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 PPP1R14DQ9NXH3 145 aa11.41□□□□□ -0.58
TRIM28-209ENST00000597423 ZNF256Q9Y2P7 627 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-209ENST00000597423 IZUMO1RA6ND01 250 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 B4DEV8 164 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 PRAC2D3DTV9 90 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 M0R036 132 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 ADCYAP1P18509 176 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 ZNF138P52744 262 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 DEFB131AP59861 70 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 FOXI2Q6ZQN5 318 aa11.4□□□□□ -0.58
TRIM28-209ENST00000597423 FAM110AQ9BQ89 295 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms