RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 VWC2Q2TAL6 325 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 AMTNQ6UX39 209 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 ZNF767PQ75MW2 155 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 SLC51BQ86UW2 128 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 C1orf158Q8N1D5 194 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 OR8A1Q8NGG7 326 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 TMEM37Q8WXS4 190 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 RPUSD4Q96CM3 377 aaKnown RBP8.89□□□□□ -0.99
SS18-225ENST00000585121 SLC39A9Q9NUM3 307 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 APLNQ9ULZ1 77 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 PXMP4Q9Y6I8 212 aa8.89□□□□□ -0.99
SS18-225ENST00000585121 IGHV4-4A0A075B6R2 117 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 M0R2Z0 102 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 MRPS12O15235 138 aaKnown RBP8.88□□□□□ -0.99
SS18-225ENST00000585121 BCL2L11O43521 198 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 MPDU1O75352 247 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 FGF7P21781 194 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 PRR20EP86478 221 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 PRR20CP86479 221 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 PRR20DP86480 221 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 PRR20BP86481 221 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 PRR20AP86496 221 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 GUK1Q16774 197 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 ARPC5LQ9BPX5 153 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 NIPSNAP3BQ9BS92 247 aa8.88□□□□□ -0.99
SS18-225ENST00000585121 EPPK1P58107 5090 aaKnown RBP8.87□□□□□ -0.99
SS18-225ENST00000585121 FAM222AQ5U5X8 452 aa8.87□□□□□ -0.99
SS18-225ENST00000585121 TEX261Q6UWH6 196 aa8.87□□□□□ -0.99
SS18-225ENST00000585121 OR10J6PQ8NGY7 276 aa8.87□□□□□ -0.99
SS18-225ENST00000585121 ZNF331Q9NQX6 463 aaPredicted RBP8.87□□□□□ -0.99
SS18-225ENST00000585121 DKK2Q9UBU2 259 aa8.87□□□□□ -0.99
SS18-225ENST00000585121 SNRPCP09234 159 aaKnown RBP8.86□□□□□ -0.99
SS18-225ENST00000585121 EIF5AP63241 154 aaKnown RBP8.86□□□□□ -0.99
SS18-225ENST00000585121 NDUFAF3Q9BU61 184 aa8.86□□□□□ -0.99
SS18-225ENST00000585121 YTHDF2Q9Y5A9 579 aaKnown RBP8.86□□□□□ -0.99
SS18-225ENST00000585121 VPS13DQ5THJ4 4388 aa8.86□□□□□ -0.99
SS18-225ENST00000585121 H3BTX0 84 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 IFNA7P01567 189 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 TSPOP30536 169 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 DAD1P61803 113 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 NHLH2Q02577 135 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 MORN5Q5VZ52 161 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 BAP18Q8IXM2 172 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 TMEM256Q8N2U0 113 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 RPP25LQ8N5L8 163 aaKnown RBP8.85□□□□□ -0.99
SS18-225ENST00000585121 ZNF680Q8NEM1 530 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 OR5C1Q8NGR4 320 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 LINC01587Q99440 93 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 KCNIP2Q9NS61 270 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 TRAV12-2A0A075B6T6 113 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 TRAV5A0A0B4J249 113 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 ZNF705GA8MUZ8 300 aaPredicted RBP8.85□□□□□ -0.99
SS18-225ENST00000585121 CRXO43186 299 aaPredicted RBP8.85□□□□□ -0.99
SS18-225ENST00000585121 IGLC2P0DOY2 106 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 CDKN1BP46527 198 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 PHYHIPLQ96FC7 376 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 FAM210BQ96KR6 192 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 ZNF471Q9BX82 626 aaPredicted RBP8.85□□□□□ -0.99
SS18-225ENST00000585121 NPCDR1Q9BY65 106 aa8.85□□□□□ -0.99
SS18-225ENST00000585121 BIRC6Q9NR09 4857 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 H3BQ15 152 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 SLC17A3O00476 420 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 P0DMU3 169 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 FAM231AP0DMU4 169 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 FAM231CP0DMU5 169 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 CLINT1Q14677 625 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 STOML3Q8TAV4 291 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 SAT2Q96F10 170 aaPredicted RBP8.84□□□□□ -0.99
SS18-225ENST00000585121 CYTL1Q9NRR1 136 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 TIMM9Q9Y5J7 89 aa8.84□□□□□ -0.99
SS18-225ENST00000585121 DNAH6Q9C0G6 4158 aa8.83□□□□□ -1
SS18-225ENST00000585121 LYRM9A8MSI8 78 aa8.83□□□□□ -1
SS18-225ENST00000585121 C17orf112F2Z3M2 114 aa8.83□□□□□ -1
SS18-225ENST00000585121 ZNF253O75346 499 aa8.83□□□□□ -1
SS18-225ENST00000585121 HIST1H1EP10412 219 aaKnown RBP8.83□□□□□ -1
SS18-225ENST00000585121 TPT1P13693 172 aaKnown RBP8.83□□□□□ -1
SS18-225ENST00000585121 HTN3P15516 51 aa8.83□□□□□ -1
SS18-225ENST00000585121 TAS2R60P59551 318 aa8.83□□□□□ -1
SS18-225ENST00000585121 TMEM14CQ9P0S9 112 aa8.83□□□□□ -1
SS18-225ENST00000585121 BORCS7-ASMTA0A0B4J1R7 106 aa8.82□□□□□ -1
SS18-225ENST00000585121 PRB4P10163 310 aaPredicted RBP8.82□□□□□ -1
SS18-225ENST00000585121 HTN1P15515 57 aa8.82□□□□□ -1
SS18-225ENST00000585121 ZNF266Q14584 549 aa8.82□□□□□ -1
SS18-225ENST00000585121 EIF5AL1Q6IS14 154 aaKnown RBP8.82□□□□□ -1
SS18-225ENST00000585121 MRPL53Q96EL3 112 aaKnown RBP8.82□□□□□ -1
SS18-225ENST00000585121 C20orf144Q9BQM9 153 aa8.82□□□□□ -1
SS18-225ENST00000585121 ZNF586Q9NXT0 402 aa8.82□□□□□ -1
SS18-225ENST00000585121 PLA2G2EQ9NZK7 142 aa8.82□□□□□ -1
SS18-225ENST00000585121 PRELID1Q9Y255 219 aa8.82□□□□□ -1
SS18-225ENST00000585121 TRBV19A0A075B6N1 114 aa8.81□□□□□ -1
SS18-225ENST00000585121 PRAC2D3DTV9 90 aa8.81□□□□□ -1
SS18-225ENST00000585121 H7BYZ3 331 aa8.81□□□□□ -1
SS18-225ENST00000585121 IFNA5P01569 189 aa8.81□□□□□ -1
SS18-225ENST00000585121 LEPP41159 167 aa8.81□□□□□ -1
SS18-225ENST00000585121 PDE6HQ13956 83 aa8.81□□□□□ -1
SS18-225ENST00000585121 CCDC28AQ8IWP9 274 aa8.81□□□□□ -1
SS18-225ENST00000585121 C16orf74Q96GX8 76 aa8.81□□□□□ -1
SS18-225ENST00000585121 ATP5SQ99766 215 aa8.81□□□□□ -1
SS18-225ENST00000585121 WDR61Q9GZS3 305 aaKnown RBP8.81□□□□□ -1
SS18-225ENST00000585121 AAMDCQ9H7C9 122 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms