RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 Q6ZWC4 215 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 TRPT1Q86TN4 253 aaKnown RBP6.88□□□□□ -1.31
LDLR-211ENST00000560173 RPP25LQ8N5L8 163 aaKnown RBP6.88□□□□□ -1.31
LDLR-211ENST00000560173 OR1L4Q8NGR5 311 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 TMEM37Q8WXS4 190 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 RAB24Q969Q5 203 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 PFDN5Q99471 154 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 OVOL2Q9BRP0 275 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 EDA2RQ9HAV5 297 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 VAX2Q9UIW0 290 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 TP53TG1Q9Y2A0 90 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 ELOA3CA0A087WX78 387 aaPredicted RBP6.87□□□□□ -1.31
LDLR-211ENST00000560173 MRPS12O15235 138 aaKnown RBP6.87□□□□□ -1.31
LDLR-211ENST00000560173 CXorf1O96002 111 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 BCL2P10415 239 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 ID1P41134 155 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 DEFB135Q30KP9 77 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 SOHLH1Q5JUK2 328 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 ACTL10Q5JWF8 245 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 C10orf113Q5VZT2 155 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 FAM122CQ6P4D5 195 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 LCN15Q6UWW0 184 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 LINC00305Q7Z4B0 112 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 STHQ8IWL8 128 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 GATAD1Q8WUU5 269 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 MRPL32Q9BYC8 188 aaKnown RBP6.87□□□□□ -1.31
LDLR-211ENST00000560173 CSTL1Q9H114 145 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 DNAJC4Q9NNZ3 241 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 RNF24Q9Y225 148 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 ARL2-SNX15V9GYD0 113 aa6.87□□□□□ -1.31
LDLR-211ENST00000560173 A0A087X0K7 114 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 LOC102723971A0A1B0GUV8 181 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 TMEM250H0YL14 139 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 SPRY2O43597 315 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 CA1P00915 261 aaPredicted RBP6.86□□□□□ -1.31
LDLR-211ENST00000560173 GIG44P09565 113 aaPredicted RBP6.86□□□□□ -1.31
LDLR-211ENST00000560173 HLA-DRB4P13762 266 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 ATF4P18848 351 aaPredicted RBP6.86□□□□□ -1.31
LDLR-211ENST00000560173 DEFB1P60022 68 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 FAM74A3Q4VXF1 159 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 MORN5Q5VZ52 161 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 RNF183Q96D59 192 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 C16orf92Q96LL3 132 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 C20orf173Q96LM9 149 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 TMEM167BQ9NRX6 74 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 GNG13Q9P2W3 67 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 HLA-DRB4X5D2U9 266 aa6.86□□□□□ -1.31
LDLR-211ENST00000560173 CSMD3Q7Z407 3707 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 TRAV8-2A0A0B4J237 113 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 H3BMM0 161 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 STAG3L2P0CL84 134 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 STAG3L3P0CL85 134 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 ZNF726P1Q15940 193 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 GCSAMLQ5JQS6 135 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 GDF5OSQ5U4N7 250 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 MORN3Q6PF18 240 aaPredicted RBP6.85□□□□□ -1.31
LDLR-211ENST00000560173 PQLC2Q6ZP29 291 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 FOXI2Q6ZQN5 318 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 NKX6-2Q9C056 277 aaPredicted RBP6.85□□□□□ -1.31
LDLR-211ENST00000560173 SAV1Q9H4B6 383 aaPredicted RBP6.85□□□□□ -1.31
LDLR-211ENST00000560173 PRELID1Q9Y255 219 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 RFNGQ9Y644 331 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 SACSQ9NZJ4 4579 aa6.85□□□□□ -1.31
LDLR-211ENST00000560173 TRAV5A0A0B4J249 113 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 A0A1B0GV50 99 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 F6UZH7 168 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 PDE6DO43924 150 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 SRP19P09132 144 aaKnown RBP6.84□□□□□ -1.31
LDLR-211ENST00000560173 IGLC2P0DOY2 106 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 CCL20P78556 96 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 SRSF3P84103 164 aaKnown RBP6.84□□□□□ -1.31
LDLR-211ENST00000560173 MEF2BQ02080 365 aaPredicted RBP6.84□□□□□ -1.31
LDLR-211ENST00000560173 PNRC1Q12796 327 aaPredicted RBP6.84□□□□□ -1.31
LDLR-211ENST00000560173 ICAM4Q14773 271 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 RHEBQ15382 184 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 BPIFA4PQ86YQ2 179 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 RNF182Q8N6D2 247 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 NIPSNAP3BQ9BS92 247 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 FUT9Q9Y231 359 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 STARD9Q9P2P6 4700 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 TENM2Q9NT68 2774 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 LYSTQ99698 3801 aa6.84□□□□□ -1.31
LDLR-211ENST00000560173 A0A0J9YX75 114 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 B4DEV8 164 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 F6UB75 175 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 H3BQ15 152 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 FGF8P55075 233 aaPredicted RBP6.83□□□□□ -1.32
LDLR-211ENST00000560173 FAM78BQ5VT40 261 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 SPATA31B1PQ5VZV4 182 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 IGFL4Q6B9Z1 124 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 IQCF2Q8IXL9 164 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 CLRN3Q8NCR9 226 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 MUC7Q8TAX7 377 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 RXFP4Q8TDU9 374 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 CLUHP3Q96NS8 147 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 DNAH1Q9P2D7 4330 aa6.83□□□□□ -1.32
LDLR-211ENST00000560173 A8MTW9 85 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 C3orf84H3BNL1 204 aa6.82□□□□□ -1.32
LDLR-211ENST00000560173 SLC17A3O00476 420 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms