RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CST9LP1Q5W188 147 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 C11orf52Q96A22 123 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 ATG101Q9BSB4 218 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 YTHDF2Q9Y5A9 579 aaKnown RBP11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 PGPA6NDG6 321 aa11.98□□□□□ -0.49
PRPF40A-212ENST00000545856 UBE2G2P60604 165 aa11.98□□□□□ -0.49
PRPF40A-212ENST00000545856 SUMO1P63165 101 aaKnown RBP11.98□□□□□ -0.49
PRPF40A-212ENST00000545856 ICAM4Q14773 271 aa11.98□□□□□ -0.49
PRPF40A-212ENST00000545856 GUCA2BQ16661 112 aa11.98□□□□□ -0.49
PRPF40A-212ENST00000545856 GTSCR1Q86UQ5 136 aa11.98□□□□□ -0.49
PRPF40A-212ENST00000545856 EIF5A2Q9GZV4 153 aaKnown RBP11.98□□□□□ -0.49
PRPF40A-212ENST00000545856 HAGHQ16775 308 aa11.97□□□□□ -0.49
PRPF40A-212ENST00000545856 TOR2AQ5JU69 321 aa11.97□□□□□ -0.49
PRPF40A-212ENST00000545856 GBGT1Q8N5D6 347 aa11.97□□□□□ -0.49
PRPF40A-212ENST00000545856 CYB561D1Q8N8Q1 229 aa11.97□□□□□ -0.49
PRPF40A-212ENST00000545856 EPDR1Q9UM22 224 aa11.97□□□□□ -0.49
PRPF40A-212ENST00000545856 NOTCH1P46531 2555 aa11.97□□□□□ -0.49
PRPF40A-212ENST00000545856 IGKV3-7A0A075B6H7 116 aa11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 TRBV7-9A0A0J9YWB2 115 aa11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 OR11H12B2RN74 326 aa11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 TCRAP04437 139 aa11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 FOXI2Q6ZQN5 318 aa11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 EXOC3-AS1Q8N2X6 119 aa11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 PCNPQ8WW12 178 aaKnown RBP11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 CLUHP3Q96NS8 147 aa11.96□□□□□ -0.49
PRPF40A-212ENST00000545856 TRBV6-1A0A0K0K1D8 114 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 IZUMO1RA6ND01 250 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 DIRC3C9JPN6 131 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 H3BTX0 84 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 PEX7O00628 323 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 DUSP14O95147 198 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 CD81P60033 236 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 SAMD5Q5TGI4 173 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 ZNF738Q8NE65 137 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 MAP6D1Q9H9H5 199 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 PPP1R14DQ9NXH3 145 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 LENEPQ9Y5L5 61 aa11.95□□□□□ -0.5
PRPF40A-212ENST00000545856 ZNF688P0C7X2 276 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 ATP5G3P48201 142 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 TFPI2P48307 235 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 PSMG4Q5JS54 123 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 EBLN2Q6P2I7 272 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 WFDC3Q8IUB2 231 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 TMEM75Q8N9X5 138 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 OR10J6PQ8NGY7 276 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 ODF3Q96PU9 254 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 KLF12Q9Y4X4 402 aa11.94□□□□□ -0.5
PRPF40A-212ENST00000545856 M0R3E3 92 aa11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 SNRPCP09234 159 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 CNN1P51911 297 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 ODF3L2Q3SX64 289 aa11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 C9orf47Q6ZRZ4 202 aa11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 SMIM12Q96EX1 92 aa11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 FMC1Q96HJ9 113 aa11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 LINC00052Q96N35 136 aa11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 SLC35B3Q9H1N7 401 aa11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 SAV1Q9H4B6 383 aaPredicted RBP11.93□□□□□ -0.5
PRPF40A-212ENST00000545856 TAS2R60P59551 318 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 FAM74A3Q4VXF1 159 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 KPRPQ5T749 579 aaPredicted RBP11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 COMMD7Q86VX2 200 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 RNF182Q8N6D2 247 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 OR8A1Q8NGG7 326 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 C2CD4CQ8TF44 421 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 LINC00477Q96M19 166 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 RARRES2Q99969 163 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 A0A0J9YX75 114 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 A8MTW9 85 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 NPIPB6E9PJ23 425 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 HLA-DRB4P13762 266 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 AKR1C3P42330 323 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 DEFB131AP59861 70 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 TMEM183BQ1AE95 376 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 TMEM78Q5T7P6 136 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 FAM24BQ8N5W8 94 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 C20orf173Q96LM9 149 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 HLA-DRB4X5D2U9 266 aa11.92□□□□□ -0.5
PRPF40A-212ENST00000545856 SRP19P09132 144 aaKnown RBP11.91□□□□□ -0.5
PRPF40A-212ENST00000545856 UBE2G1P62253 170 aa11.91□□□□□ -0.5
PRPF40A-212ENST00000545856 OXLD1Q5BKU9 147 aa11.91□□□□□ -0.5
PRPF40A-212ENST00000545856 C19orf73Q9NVV2 129 aa11.91□□□□□ -0.5
PRPF40A-212ENST00000545856 ZFP30Q9Y2G7 519 aa11.91□□□□□ -0.5
PRPF40A-212ENST00000545856 DNHD1Q96M86 4753 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 DNAH3Q8TD57 4116 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 SCO2A0A1W2PP80 73 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 C9JCJ5 164 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 SAPCD1Q5SSQ6 148 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 GOLT1AQ6ZVE7 132 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 NDFIP1Q9BT67 221 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 TREM1Q9NP99 234 aa11.9□□□□□ -0.5
PRPF40A-212ENST00000545856 HLA-DMBP28068 263 aa11.89□□□□□ -0.51
PRPF40A-212ENST00000545856 FLI1Q01543 452 aaPredicted RBP11.89□□□□□ -0.51
PRPF40A-212ENST00000545856 IGFL4Q6B9Z1 124 aa11.89□□□□□ -0.51
PRPF40A-212ENST00000545856 SELENOKQ9Y6D0 94 aa11.89□□□□□ -0.51
PRPF40A-212ENST00000545856 LY96Q9Y6Y9 160 aa11.89□□□□□ -0.51
PRPF40A-212ENST00000545856 ZNF705FA8MVS1 300 aaPredicted RBP11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 AMBPP02760 352 aa11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 CD7P09564 240 aa11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 TSPOP30536 169 aa11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 ZNF138P52744 262 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms