RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TMEM133Q9H2Q1 129 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 TMEM213A2RRL7 107 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 H3BRN7 92 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 K7EM74 188 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 MRPL51Q4U2R6 128 aaKnown RBP10.49□□□□□ -0.73
USP40-214ENST00000483519 PIFOQ8TCI5 191 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 SIGLEC9Q9Y336 463 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 PPIAL4EA0A075B759 164 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 CRYGBP07316 175 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 PPIAL4FP0DN26 164 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 PAX8Q06710 450 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 SAMD13Q5VXD3 122 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 ASCL2Q99929 193 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 MAP1BP46821 2468 aaKnown RBP10.49□□□□□ -0.73
USP40-214ENST00000483519 FCN3O75636 299 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 CD40P25942 277 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 NUP37Q8NFH4 326 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 C17orf77Q96MU5 243 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 HIGD1BQ9P298 99 aa10.49□□□□□ -0.73
USP40-214ENST00000483519 FBLL1A6NHQ2 334 aaKnown RBP10.48□□□□□ -0.73
USP40-214ENST00000483519 TEX22C9J3V5 150 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 NDUFS7O75251 213 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 CKS2P33552 79 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 PLGLAQ15195 96 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 PRSS57Q6UWY2 283 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 HIF1ANQ9NWT6 349 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 SHISA9B4DS77 424 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 I3L2K1 104 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 FXYD7P58549 80 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 RPL24P83731 157 aaKnown RBP10.48□□□□□ -0.73
USP40-214ENST00000483519 PPP1R27Q86WC6 154 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 C8orf49Q96NF6 230 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 AAMDCQ9H7C9 122 aa10.48□□□□□ -0.73
USP40-214ENST00000483519 PLXNB1O43157 2135 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 TMSB15BA0A087X1C1 80 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 C17orf100A8MU93 164 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 IGKV1-17P01599 117 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 THBDP07204 575 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 GCSHP23434 173 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 CNTFRP26992 372 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 IGHV1-8P0DP01 117 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 SCGB1A1P11684 91 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 DLX6P56179 175 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 S100A7AQ86SG5 101 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 DKK2Q9UBU2 259 aa10.47□□□□□ -0.73
USP40-214ENST00000483519 PRRC2CQ9Y520 2896 aaKnown RBP10.46□□□□□ -0.73
USP40-214ENST00000483519 TMEM178BH3BS89 294 aa10.46□□□□□ -0.73
USP40-214ENST00000483519 SH2D1AO60880 128 aa10.46□□□□□ -0.73
USP40-214ENST00000483519 NPYP01303 97 aa10.46□□□□□ -0.73
USP40-214ENST00000483519 PDE6HQ13956 83 aa10.46□□□□□ -0.73
USP40-214ENST00000483519 TMEM155Q4W5P6 130 aa10.46□□□□□ -0.73
USP40-214ENST00000483519 BCL6BQ8N143 479 aaPredicted RBP10.46□□□□□ -0.73
USP40-214ENST00000483519 ICE1Q9Y2F5 2266 aa10.46□□□□□ -0.74
USP40-214ENST00000483519 M0R3E3 92 aa10.46□□□□□ -0.74
USP40-214ENST00000483519 LOXP28300 417 aaPredicted RBP10.46□□□□□ -0.74
USP40-214ENST00000483519 VCX2Q9H322 139 aa10.46□□□□□ -0.74
USP40-214ENST00000483519 LYPD2Q6UXB3 125 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 CHAC1Q9BUX1 264 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 MAP1LC3AQ9H492 121 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 PPIAL4CA0A0B4J2A2 164 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 TEX48A0A1B0GUV7 120 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 PPIAL4GP0DN37 164 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 FCGR2BP31994 310 aaPredicted RBP10.45□□□□□ -0.74
USP40-214ENST00000483519 TWIST1Q15672 202 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 LINC01559Q495D7 138 aa10.45□□□□□ -0.74
USP40-214ENST00000483519 SRSF8Q9BRL6 282 aaKnown RBP10.45□□□□□ -0.74
USP40-214ENST00000483519 FXYD2P54710 66 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 CCL17Q92583 94 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 VGLL1Q99990 258 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 PLCE1Q9P212 2302 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 DSPP15924 2871 aaKnown RBP10.44□□□□□ -0.74
USP40-214ENST00000483519 WI2-2373I1.2A0A1W2PRP0 233 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 SMKR1H3BMG3 65 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 MRPS12O15235 138 aaKnown RBP10.44□□□□□ -0.74
USP40-214ENST00000483519 IL4P05112 153 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 ZNF491Q8N8L2 437 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 GLMPQ8WWB7 406 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 C18orf15Q96N68 181 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 CTSZQ9UBR2 303 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 FAM215AQ9Y5M1 114 aa10.44□□□□□ -0.74
USP40-214ENST00000483519 J3QR89 54 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 COX8CQ7Z4L0 72 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 WFDC3Q8IUB2 231 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 FBXL15Q9H469 300 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 PKD1L2Q7Z442 2459 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 IGHV1-3A0A0C4DH29 117 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 TNFRSF13BO14836 293 aaPredicted RBP10.43□□□□□ -0.74
USP40-214ENST00000483519 GNG7O60262 68 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 PRB4P10163 310 aaPredicted RBP10.43□□□□□ -0.74
USP40-214ENST00000483519 FAM27E3Q08E93 113 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 SIGMAR1Q99720 223 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 ZMAT4Q9H898 229 aa10.43□□□□□ -0.74
USP40-214ENST00000483519 LINC01546A6NGU7 62 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 K7EIM0 57 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 NXT2Q9NPJ8 142 aaKnown RBP10.42□□□□□ -0.74
USP40-214ENST00000483519 CACNA1BQ00975 2339 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 IGKCP01834 107 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 FCER1GP30273 86 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 C22orf34Q6ZV56 151 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 KAAG1Q9UBP8 84 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms