RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 LCE6AA0A183 80 aa9.41□□□□□ -0.9
COL28A1-206ENST00000465339 H3BTX0 84 aa9.41□□□□□ -0.9
COL28A1-206ENST00000465339 SLC17A3O00476 420 aa9.41□□□□□ -0.9
COL28A1-206ENST00000465339 RHOBP62745 196 aa9.41□□□□□ -0.9
COL28A1-206ENST00000465339 PDE6HQ13956 83 aa9.41□□□□□ -0.9
COL28A1-206ENST00000465339 AQP10Q96PS8 301 aa9.41□□□□□ -0.9
COL28A1-206ENST00000465339 TIMM9Q9Y5J7 89 aa9.41□□□□□ -0.9
COL28A1-206ENST00000465339 IGHV3OR16-12A0A075B7B8 117 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 TMEM189A5PLL7 270 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 BOLA2-SMG1P6H3BVE0 249 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 NANOS2P60321 138 aaKnown RBP9.4□□□□□ -0.9
COL28A1-206ENST00000465339 FFAR4Q5NUL3 377 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 MIR17HGQ75NE6 70 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 C1orf158Q8N1D5 194 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 OR10J6PQ8NGY7 276 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 PHLDA1Q8WV24 401 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-206ENST00000465339 FAM167A-AS1Q96KT0 104 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 SLC25A2Q9BXI2 301 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 OR51M1Q9H341 326 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 WFDC1Q9HC57 220 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 FUT9Q9Y231 359 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 PRELID1Q9Y255 219 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 RFNGQ9Y644 331 aa9.4□□□□□ -0.9
COL28A1-206ENST00000465339 LOC100996750A0A140TA64 210 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 M0R2Z0 102 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 JTBO76095 146 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 INSP01308 110 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 HBE1P02100 147 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 NBEAP1P0C6P0 100 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 PYYP10082 97 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 ZNF266Q14584 549 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 SPINK13Q1W4C9 94 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 INO80EQ8NBZ0 244 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-206ENST00000465339 MRPL53Q96EL3 112 aaKnown RBP9.39□□□□□ -0.91
COL28A1-206ENST00000465339 ARPC5LQ9BPX5 153 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 TMEM208Q9BTX3 173 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 KRTAP4-6Q9BYQ5 205 aa9.39□□□□□ -0.91
COL28A1-206ENST00000465339 C11orf94C9JXX5 98 aa9.38□□□□□ -0.91
COL28A1-206ENST00000465339 CRXO43186 299 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-206ENST00000465339 NDUFB4O95168 129 aa9.38□□□□□ -0.91
COL28A1-206ENST00000465339 TSPOP30536 169 aa9.38□□□□□ -0.91
COL28A1-206ENST00000465339 Q5BKY6 102 aa9.38□□□□□ -0.91
COL28A1-206ENST00000465339 PAXXQ9BUH6 204 aa9.38□□□□□ -0.91
COL28A1-206ENST00000465339 AAMDCQ9H7C9 122 aa9.38□□□□□ -0.91
COL28A1-206ENST00000465339 KMT2CQ8NEZ4 4911 aaKnown RBP9.37□□□□□ -0.91
COL28A1-206ENST00000465339 PRAC2D3DTV9 90 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 CDKN1BP46527 198 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 TAS2R45P59539 299 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 RRN3P1Q2M238 152 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 ACOT6Q3I5F7 207 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-206ENST00000465339 TMEM256Q8N2U0 113 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 OR2T35Q8NGX2 323 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 BLNKQ8WV28 456 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 FXYD5Q96DB9 178 aa9.37□□□□□ -0.91
COL28A1-206ENST00000465339 TEX48A0A1B0GUV7 120 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 NPIPB6E9PJ23 425 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 OR7C2O60412 319 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 OR10J4P0C629 311 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 SPART-AS1P0CW21 52 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 M6PRP20645 277 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 KHDC3LQ587J8 217 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 BAP18Q8IXM2 172 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 CLRN3Q8NCR9 226 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 ODF3Q96PU9 254 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 C20orf144Q9BQM9 153 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 TNFSF18Q9UNG2 199 aa9.36□□□□□ -0.91
COL28A1-206ENST00000465339 DYNC2H1Q8NCM8 4307 aaKnown RBP9.36□□□□□ -0.91
COL28A1-206ENST00000465339 TRAV12-2A0A075B6T6 113 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 FXYD6-FXYD2A0A087WZ82 144 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 LOC102723971A0A1B0GUV8 181 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 A0A1W2PPV4 95 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 M0R3E3 92 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 PRB4P10163 310 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-206ENST00000465339 EMP1P54849 157 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 TCTAP57738 103 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 ICAM4Q14773 271 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 LYPD1Q8N2G4 141 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 EXOC3-AS1Q8N2X6 119 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 RPP25LQ8N5L8 163 aaKnown RBP9.35□□□□□ -0.91
COL28A1-206ENST00000465339 C2CD4CQ8TF44 421 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 LINC00477Q96M19 166 aa9.35□□□□□ -0.91
COL28A1-206ENST00000465339 PSMG3Q9BT73 122 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-206ENST00000465339 TRAV10A0A0B4J240 114 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 RNF222A6NCQ9 220 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 CT45A10P0DMU9 189 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 LEPP41159 167 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 SERF2P84101 59 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 C12orf74Q32Q52 190 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 Q6ZTC4 211 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 HSD17B11Q8NBQ5 300 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 OR10G4Q8NGN3 311 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 OR10G9Q8NGN4 311 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 OR10G7Q8NGN6 311 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 OR2G3Q8NGZ4 309 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 ZNF503Q96F45 646 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 LINC01587Q99440 93 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 CELA1Q9UNI1 258 aa9.34□□□□□ -0.91
COL28A1-206ENST00000465339 STARD9Q9P2P6 4700 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 BORCS7-ASMTA0A0B4J1R7 106 aa9.33□□□□□ -0.92
COL28A1-206ENST00000465339 ZNF705GA8MUZ8 300 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms