RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 COX6A1P12074 109 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 GATA2P23769 480 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-204ENST00000455883 FOXA3P55318 350 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-204ENST00000455883 LINC01620Q4KN68 170 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 RNASE6Q93091 150 aaKnown RBP4.28□□□□□ -1.72
CSMD3-204ENST00000455883 NDUFA3O95167 84 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 LOXL1Q08397 574 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-204ENST00000455883 LTBRP36941 435 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 FAM240AA0A1B0GVK7 77 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 FOXL2P58012 376 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 Q86TA4 180 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 TRAV12-1A0A0B4J245 112 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 FOXE3Q13461 319 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 C18orf32Q8TCD1 76 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 PIFOQ8TCI5 191 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 A0A1W2PRF3 423 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 A0A1W2PRM7 423 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 SAA1P0DJI8 122 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-204ENST00000455883 SNHG12Q9BXW3 62 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 ADARB2-AS1A8MUL3 147 aa4.28□□□□□ -1.72
CSMD3-204ENST00000455883 HCP5Q6MZN7 132 aa4.28□□□□□ -1.73
CSMD3-204ENST00000455883 ZNF114Q8NC26 417 aa4.28□□□□□ -1.73
CSMD3-204ENST00000455883 FAM90A27PA6NNH2 459 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 PAX4O43316 350 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 IGHV3-13P01766 116 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 MED14OSP0DP75 135 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 PEBP1P30086 187 aaKnown RBP4.27□□□□□ -1.73
CSMD3-204ENST00000455883 RNF138Q8WVD3 245 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 SHANK2-AS3Q9BTD1 123 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 RNASE7Q9H1E1 156 aaKnown RBP4.27□□□□□ -1.73
CSMD3-204ENST00000455883 FAM60AQ9NP50 221 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 C9orf172C9J069 976 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 MPV17L2Q567V2 206 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 C5orf64Q2M2E5 130 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 PRIMA1Q86XR5 153 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 CEND1Q8N111 149 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 ZNF385AQ96PM9 386 aaKnown RBP4.27□□□□□ -1.73
CSMD3-204ENST00000455883 TMSB15BA0A087X1C1 80 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 ZAR1Q86SH2 424 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 PATE1Q8WXA2 126 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 C18orf15Q96N68 181 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 ZNRF1Q8ND25 227 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 ITLN1Q8WWA0 313 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 CCL13Q99616 98 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 SLX1AQ9BQ83 275 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 FLNAP21333 2647 aaKnown RBP4.27□□□□□ -1.73
CSMD3-204ENST00000455883 BMPERQ8N8U9 685 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 Q8TCH9 128 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 CELA2BP08218 269 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-204ENST00000455883 C3orf79P0CE67 100 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 ORMDL1Q9P0S3 153 aa4.27□□□□□ -1.73
CSMD3-204ENST00000455883 TRAV26-1A0A087WT03 109 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 MUC21A0A0G2JKD1 596 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 MUC21A0A140T8X8 626 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 UQCRQO14949 82 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 IGKV1D-16P01601 117 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 MUC21Q5SSG8 566 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 UCN2Q96RP3 112 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 SPSB2Q99619 263 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 A0A1W2PQF6 199 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 GREM1O60565 184 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 CDKN1AP38936 164 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 HIST1H4AP62805 103 aaKnown RBP4.26□□□□□ -1.73
CSMD3-204ENST00000455883 C9orf50Q5SZB4 431 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 LAIR2Q6ISS4 152 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 IMMP1LQ96LU5 166 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 E9PLN8 166 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 CCL21O00585 134 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 Q8NFD4 153 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 TMEM256-PLSCR3K7ERE1 68 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 RNASE1P07998 156 aaKnown RBP4.26□□□□□ -1.73
CSMD3-204ENST00000455883 PRTN3P24158 256 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 FOXL2NBQ6ZUU3 175 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 FAM19A2Q8N3H0 131 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 C16orf54Q6UWD8 224 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 ZNF664Q8N3J9 261 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 FAM168AQ92567 244 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 COX6B1P14854 86 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 CCL8P80075 99 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 SPINK9Q5DT21 86 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 SAP25Q8TEE9 199 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 SMIM14Q96QK8 99 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 MCRIP2Q9BUT9 160 aaKnown RBP4.26□□□□□ -1.73
CSMD3-204ENST00000455883 TRBV25-1A0A075B6N4 114 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 WBP1Q96G27 269 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 C15orf32Q32M92 178 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 KLK15Q9H2R5 256 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 FOXI2Q6ZQN5 318 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 ST6GALNAC3Q8NDV1 305 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 ZC2HC1AQ96GY0 325 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 CCL19Q99731 98 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 DAZ2Q13117 558 aaKnown RBP4.26□□□□□ -1.73
CSMD3-204ENST00000455883 PCOLCEQ15113 449 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 VWC2Q2TAL6 325 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 PRSS41Q7RTY9 318 aa4.26□□□□□ -1.73
CSMD3-204ENST00000455883 DAZ4Q86SG3 579 aaKnown RBP4.26□□□□□ -1.73
CSMD3-204ENST00000455883 DAZ3Q9NR90 486 aaKnown RBP4.26□□□□□ -1.73
CSMD3-204ENST00000455883 KIR2DL5BQ8NHK3 375 aa4.25□□□□□ -1.73
CSMD3-204ENST00000455883 J3QLI3 93 aa4.25□□□□□ -1.73
CSMD3-204ENST00000455883 VEGFBP49765 207 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms