RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ARL6Q9H0F7 186 aa8.44□□□□□ -1.06
UPF3B-204ENST00000619445 ARV1Q9H2C2 271 aa8.44□□□□□ -1.06
UPF3B-204ENST00000619445 DNAH17Q9UFH2 4485 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 MUC4Q99102 2169 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 ATP5G1P05496 136 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 METTL15P1P0C7V9 234 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 CDKN1BP46527 198 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 ATP5G3P48201 142 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 HIST1H1AQ02539 215 aaPredicted RBP8.43□□□□□ -1.06
UPF3B-204ENST00000619445 ZNF846Q147U1 533 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 C1orf134Q5TEV5 83 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 RNF182Q8N6D2 247 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 MITD1Q8WV92 249 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 LINC01587Q99440 93 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 KRTAP17-1Q9BYP8 105 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 TIMM8BQ9Y5J9 83 aaPredicted RBP8.43□□□□□ -1.06
UPF3B-204ENST00000619445 NACAE9PAV3 2078 aa8.43□□□□□ -1.06
UPF3B-204ENST00000619445 CBY3A6NI87 242 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 ZNF705GA8MUZ8 300 aaPredicted RBP8.42□□□□□ -1.06
UPF3B-204ENST00000619445 H7BYZ3 331 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 SCGB1D2O95969 90 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 DEFB130BP0DP73 79 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 DEFB130AP0DP74 79 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 RRAS2P62070 204 aaPredicted RBP8.42□□□□□ -1.06
UPF3B-204ENST00000619445 BAP18Q8IXM2 172 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 ZBTB8BQ8NAP8 495 aaPredicted RBP8.42□□□□□ -1.06
UPF3B-204ENST00000619445 OR10J6PQ8NGY7 276 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 RPUSD4Q96CM3 377 aaKnown RBP8.42□□□□□ -1.06
UPF3B-204ENST00000619445 UHRF2Q96PU4 802 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 RBM38Q9H0Z9 239 aaKnown RBP8.42□□□□□ -1.06
UPF3B-204ENST00000619445 PXMP4Q9Y6I8 212 aa8.42□□□□□ -1.06
UPF3B-204ENST00000619445 FAT2Q9NYQ8 4349 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 KIAA1109Q2LD37 5005 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 IGLV2-18A0A075B6J9 118 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 F5H768 121 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 L7N2F9 121 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 COX7A2P2O60397 106 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 CCL18P55774 89 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 VAMP2P63027 116 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 BAK1Q16611 211 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 GUK1Q16774 197 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 Q6ZRG5 221 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 LINC00305Q7Z4B0 112 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 TMEM263Q8WUH6 116 aaKnown RBP8.41□□□□□ -1.06
UPF3B-204ENST00000619445 ZNF331Q9NQX6 463 aaPredicted RBP8.41□□□□□ -1.06
UPF3B-204ENST00000619445 PLA2G2EQ9NZK7 142 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 GSKIPQ9P0R6 139 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 FLVCR2Q9UPI3 526 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 DNAH2Q9P225 4427 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 PKHD1P08F94 4074 aa8.41□□□□□ -1.06
UPF3B-204ENST00000619445 AGPAT2O15120 278 aa8.4□□□□□ -1.06
UPF3B-204ENST00000619445 SLC38A11Q08AI6 406 aa8.4□□□□□ -1.06
UPF3B-204ENST00000619445 IGFL4Q6B9Z1 124 aa8.4□□□□□ -1.06
UPF3B-204ENST00000619445 CCDC28AQ8IWP9 274 aa8.4□□□□□ -1.06
UPF3B-204ENST00000619445 RCL1Q9Y2P8 373 aaKnown RBP8.4□□□□□ -1.06
UPF3B-204ENST00000619445 TRAV12-2A0A075B6T6 113 aa8.39□□□□□ -1.07
UPF3B-204ENST00000619445 C7orf66A4D0T2 115 aa8.39□□□□□ -1.07
UPF3B-204ENST00000619445 MRPS12O15235 138 aaKnown RBP8.39□□□□□ -1.07
UPF3B-204ENST00000619445 PVALBP20472 110 aaPredicted RBP8.39□□□□□ -1.07
UPF3B-204ENST00000619445 C10orf113Q5VZT2 155 aa8.39□□□□□ -1.07
UPF3B-204ENST00000619445 PATE2Q6UY27 113 aa8.39□□□□□ -1.07
UPF3B-204ENST00000619445 C12orf45Q8N5I9 185 aaPredicted RBP8.39□□□□□ -1.07
UPF3B-204ENST00000619445 OR1L4Q8NGR5 311 aa8.39□□□□□ -1.07
UPF3B-204ENST00000619445 ODF3Q96PU9 254 aa8.39□□□□□ -1.07
UPF3B-204ENST00000619445 PFDN5Q99471 154 aa8.39□□□□□ -1.07
UPF3B-204ENST00000619445 LINC00854A0A1B0GVQ3 168 aa8.38□□□□□ -1.07
UPF3B-204ENST00000619445 PLAC8L1A1L4L8 177 aa8.38□□□□□ -1.07
UPF3B-204ENST00000619445 MBPP02686 304 aaPredicted RBP8.38□□□□□ -1.07
UPF3B-204ENST00000619445 IL7P13232 177 aa8.38□□□□□ -1.07
UPF3B-204ENST00000619445 CAMLGP49069 296 aa8.38□□□□□ -1.07
UPF3B-204ENST00000619445 CLINT1Q14677 625 aa8.38□□□□□ -1.07
UPF3B-204ENST00000619445 ZNF503Q96F45 646 aa8.38□□□□□ -1.07
UPF3B-204ENST00000619445 DNAJC4Q9NNZ3 241 aa8.38□□□□□ -1.07
UPF3B-204ENST00000619445 ZNF253O75346 499 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 CCNKO75909 580 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 NUDT3O95989 172 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 HTN1P15515 57 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 AZU1P20160 251 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 BTCP35070 178 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 LEPP41159 167 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 HBG1P69891 147 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 HBG2P69892 147 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 RNASE8Q8TDE3 154 aaKnown RBP8.37□□□□□ -1.07
UPF3B-204ENST00000619445 C20orf85Q9H1P6 137 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 UQCC1Q9NVA1 299 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 NDUFA13Q9P0J0 144 aa8.37□□□□□ -1.07
UPF3B-204ENST00000619445 NBDYA0A0U1RRE5 68 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 SNURFLB1AK76 121 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 LYRM1O43325 122 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 S100A11P31949 105 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 BCAP31P51572 246 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 CAV2P51636 162 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 LINC01559Q495D7 138 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 STX12Q86Y82 276 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 ZNRF2Q8NHG8 242 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 TMEM37Q8WXS4 190 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 MRPL53Q96EL3 112 aaKnown RBP8.36□□□□□ -1.07
UPF3B-204ENST00000619445 SDHCQ99643 169 aaPredicted RBP8.36□□□□□ -1.07
UPF3B-204ENST00000619445 MGST2Q99735 147 aa8.36□□□□□ -1.07
UPF3B-204ENST00000619445 NOP10Q9NPE3 64 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 171.1 ms