RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 LRRC20Q8TCA0 184 aa11.6□□□□□ -0.55
BRCA1-228ENST00000618469 SLC35B3Q9H1N7 401 aa11.6□□□□□ -0.55
BRCA1-228ENST00000618469 SLC39A9Q9NUM3 307 aa11.6□□□□□ -0.55
BRCA1-228ENST00000618469 PXMP4Q9Y6I8 212 aa11.6□□□□□ -0.55
BRCA1-228ENST00000618469 X6R8D5 127 aa11.6□□□□□ -0.55
BRCA1-228ENST00000618469 NUPR2A6NF83 97 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 MRPS12O15235 138 aaKnown RBP11.59□□□□□ -0.55
BRCA1-228ENST00000618469 MPDU1O75352 247 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 MPC2O95563 127 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 MIFP14174 115 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 RPL29P47914 159 aaKnown RBP11.59□□□□□ -0.55
BRCA1-228ENST00000618469 BPIFA4PQ86YQ2 179 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 ZNF709Q8N972 641 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 LINC00476Q8WZB0 136 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 PFDN5Q99471 154 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 NPCDR1Q9BY65 106 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 HERC2O95714 4834 aa11.59□□□□□ -0.55
BRCA1-228ENST00000618469 SNRPCP09234 159 aaKnown RBP11.58□□□□□ -0.56
BRCA1-228ENST00000618469 HLA-DMBP28068 263 aa11.58□□□□□ -0.56
BRCA1-228ENST00000618469 PSG9Q00887 426 aa11.58□□□□□ -0.56
BRCA1-228ENST00000618469 LCN15Q6UWW0 184 aa11.58□□□□□ -0.56
BRCA1-228ENST00000618469 C11orf45Q8TAV5 145 aa11.58□□□□□ -0.56
BRCA1-228ENST00000618469 CLUHP3Q96NS8 147 aa11.58□□□□□ -0.56
BRCA1-228ENST00000618469 DNAJC4Q9NNZ3 241 aa11.58□□□□□ -0.56
BRCA1-228ENST00000618469 MBD2Q9UBB5 411 aa11.58□□□□□ -0.56
BRCA1-228ENST00000618469 H3BTX0 84 aa11.57□□□□□ -0.56
BRCA1-228ENST00000618469 RBMY1A1P0DJD3 496 aaKnown RBP11.57□□□□□ -0.56
BRCA1-228ENST00000618469 RBMY1CP0DJD4 496 aa11.57□□□□□ -0.56
BRCA1-228ENST00000618469 CXCL2P19875 107 aa11.57□□□□□ -0.56
BRCA1-228ENST00000618469 CXCL3P19876 107 aa11.57□□□□□ -0.56
BRCA1-228ENST00000618469 CNN1P51911 297 aaKnown RBP11.57□□□□□ -0.56
BRCA1-228ENST00000618469 NANOS2P60321 138 aaKnown RBP11.57□□□□□ -0.56
BRCA1-228ENST00000618469 RBMY1FQ15415 496 aaKnown RBP11.57□□□□□ -0.56
BRCA1-228ENST00000618469 SLC50A1Q9BRV3 221 aa11.57□□□□□ -0.56
BRCA1-228ENST00000618469 MFFQ9GZY8 342 aa11.57□□□□□ -0.56
BRCA1-228ENST00000618469 PCLOQ9Y6V0 5065 aa11.56□□□□□ -0.56
BRCA1-228ENST00000618469 IGHV3OR16-12A0A075B7B8 117 aa11.56□□□□□ -0.56
BRCA1-228ENST00000618469 TRAV5A0A0B4J249 113 aa11.56□□□□□ -0.56
BRCA1-228ENST00000618469 ZNF705DP0CH99 300 aaPredicted RBP11.56□□□□□ -0.56
BRCA1-228ENST00000618469 ZNF705BP0CI00 300 aaPredicted RBP11.56□□□□□ -0.56
BRCA1-228ENST00000618469 PRB4P10163 310 aaPredicted RBP11.56□□□□□ -0.56
BRCA1-228ENST00000618469 CHAC2Q8WUX2 184 aa11.56□□□□□ -0.56
BRCA1-228ENST00000618469 RNF126Q9BV68 326 aa11.56□□□□□ -0.56
BRCA1-228ENST00000618469 HSPB11Q9Y547 144 aa11.56□□□□□ -0.56
BRCA1-228ENST00000618469 A8MTW9 85 aa11.55□□□□□ -0.56
BRCA1-228ENST00000618469 SLC17A3O00476 420 aa11.55□□□□□ -0.56
BRCA1-228ENST00000618469 DUSP14O95147 198 aaKnown RBP11.55□□□□□ -0.56
BRCA1-228ENST00000618469 IGLC2P0DOY2 106 aa11.55□□□□□ -0.56
BRCA1-228ENST00000618469 HIST1H1AQ02539 215 aaPredicted RBP11.55□□□□□ -0.56
BRCA1-228ENST00000618469 PSG3Q16557 428 aa11.55□□□□□ -0.56
BRCA1-228ENST00000618469 GCSAMLQ5JQS6 135 aa11.55□□□□□ -0.56
BRCA1-228ENST00000618469 CEMP1Q6PRD7 247 aaPredicted RBP11.55□□□□□ -0.56
BRCA1-228ENST00000618469 PHLDA1Q8WV24 401 aaPredicted RBP11.55□□□□□ -0.56
BRCA1-228ENST00000618469 ATP5SQ99766 215 aa11.55□□□□□ -0.56
BRCA1-228ENST00000618469 WDR61Q9GZS3 305 aaKnown RBP11.55□□□□□ -0.56
BRCA1-228ENST00000618469 ZNF331Q9NQX6 463 aaPredicted RBP11.55□□□□□ -0.56
BRCA1-228ENST00000618469 KCNIP2Q9NS61 270 aa11.55□□□□□ -0.56
BRCA1-228ENST00000618469 RPL12P30050 165 aaKnown RBP11.54□□□□□ -0.56
BRCA1-228ENST00000618469 AMTNQ6UX39 209 aa11.54□□□□□ -0.56
BRCA1-228ENST00000618469 ZNF705AQ6ZN79 300 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-228ENST00000618469 RPP25LQ8N5L8 163 aaKnown RBP11.54□□□□□ -0.56
BRCA1-228ENST00000618469 OR11H7Q8NGC8 314 aa11.54□□□□□ -0.56
BRCA1-228ENST00000618469 SMIM3Q9BZL3 60 aa11.54□□□□□ -0.56
BRCA1-228ENST00000618469 MED28Q9H204 178 aa11.54□□□□□ -0.56
BRCA1-228ENST00000618469 ZNF705FA8MVS1 300 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-228ENST00000618469 H3BQ15 152 aa11.53□□□□□ -0.56
BRCA1-228ENST00000618469 M0R2Z0 102 aa11.53□□□□□ -0.56
BRCA1-228ENST00000618469 FCN2Q15485 313 aa11.53□□□□□ -0.56
BRCA1-228ENST00000618469 SPINK13Q1W4C9 94 aa11.53□□□□□ -0.56
BRCA1-228ENST00000618469 OR8A1Q8NGG7 326 aa11.53□□□□□ -0.56
BRCA1-228ENST00000618469 RPUSD4Q96CM3 377 aaKnown RBP11.53□□□□□ -0.56
BRCA1-228ENST00000618469 HRH4Q9H3N8 390 aa11.53□□□□□ -0.56
BRCA1-228ENST00000618469 KLK5Q9Y337 293 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-228ENST00000618469 GOLT1BQ9Y3E0 138 aa11.53□□□□□ -0.56
BRCA1-228ENST00000618469 C17orf112F2Z3M2 114 aa11.52□□□□□ -0.57
BRCA1-228ENST00000618469 BOLA2-SMG1P6H3BVE0 249 aa11.52□□□□□ -0.57
BRCA1-228ENST00000618469 CELA1Q9UNI1 258 aa11.52□□□□□ -0.57
BRCA1-228ENST00000618469 KMT2AQ03164 3969 aa11.52□□□□□ -0.57
BRCA1-228ENST00000618469 INSP01308 110 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 AMBPP02760 352 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 PYYP10082 97 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 RHOBP62745 196 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 GUK1Q16774 197 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 RGS21Q2M5E4 152 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 BAP18Q8IXM2 172 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 IGF2BP2-AS1Q96M15 143 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 NEU1Q99519 415 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 TMEM208Q9BTX3 173 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 PPP1R14DQ9NXH3 145 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 ZNF586Q9NXT0 402 aa11.51□□□□□ -0.57
BRCA1-228ENST00000618469 IFNA5P01569 189 aa11.5□□□□□ -0.57
BRCA1-228ENST00000618469 EMP1P54849 157 aa11.5□□□□□ -0.57
BRCA1-228ENST00000618469 MIR17HGQ75NE6 70 aa11.5□□□□□ -0.57
BRCA1-228ENST00000618469 C1orf158Q8N1D5 194 aa11.5□□□□□ -0.57
BRCA1-228ENST00000618469 SAT2Q96F10 170 aaPredicted RBP11.5□□□□□ -0.57
BRCA1-228ENST00000618469 TMEM14CQ9P0S9 112 aa11.5□□□□□ -0.57
BRCA1-228ENST00000618469 RFNGQ9Y644 331 aa11.5□□□□□ -0.57
BRCA1-228ENST00000618469 TRAV12-2A0A075B6T6 113 aa11.49□□□□□ -0.57
BRCA1-228ENST00000618469 SMIM9A6NGZ8 99 aa11.49□□□□□ -0.57
BRCA1-228ENST00000618469 HBE1P02100 147 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms