RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SMIM27A0A1W2PRY6 76 aa11.56□□□□□ -0.56
SHROOM1-208ENST00000617339 ZNF833PQ6ZTB9 187 aa11.56□□□□□ -0.56
SHROOM1-208ENST00000617339 OSR1Q8TAX0 266 aaPredicted RBP11.56□□□□□ -0.56
SHROOM1-208ENST00000617339 TMEM186Q96B77 213 aa11.56□□□□□ -0.56
SHROOM1-208ENST00000617339 RPL11P62913 178 aaKnown RBP11.56□□□□□ -0.56
SHROOM1-208ENST00000617339 OR5AN1Q8NGI8 311 aa11.56□□□□□ -0.56
SHROOM1-208ENST00000617339 TMEM167BQ9NRX6 74 aa11.56□□□□□ -0.56
SHROOM1-208ENST00000617339 GAGE10A6NGK3 116 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 LEPROTL1O95214 131 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 COX19Q49B96 90 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 VSTM2AQ8TAG5 236 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 RAB37Q96AX2 223 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 CEACAM3P40198 252 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 CD69Q07108 199 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 ZNF503Q96F45 646 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 MRPL27Q9P0M9 148 aaKnown RBP11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 IGHV1-3A0A0C4DH29 117 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 PRSS46E5RG02 174 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 RHOGP84095 191 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 BRD3OSQ6XYD6 125 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 LY96Q9Y6Y9 160 aa11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 FN1P02751 2386 aaKnown RBP11.55□□□□□ -0.56
SHROOM1-208ENST00000617339 TMEM116Q8NCL8 245 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 LSM4Q9Y4Z0 139 aaKnown RBP11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 COX6B1P14854 86 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 DEFB125Q8N687 156 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 NDUFA4L2Q9NRX3 87 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 C7orf71A4D174 169 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 SYS1-DBNDD2H3BUS1 97 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 CIDEAO60543 219 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 C3orf36Q3SXR2 165 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 PGLYRP4Q96LB8 373 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 TPPP3Q9BW30 176 aa11.54□□□□□ -0.56
SHROOM1-208ENST00000617339 C19orf84I3L1E1 186 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 C12orf54Q6X4T0 127 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 LINC00305Q7Z4B0 112 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 C10orf113Q5VZT2 155 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 AMMECR1Q9Y4X0 333 aaPredicted RBP11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 FAM231BA6NCW3 169 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 CGB1A6NKQ9 187 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 BUB1B-PAK6H3BSN5 160 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 URB1-AS1Q96HZ7 61 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 TMEM191AQ9H0A3 160 aa11.53□□□□□ -0.56
SHROOM1-208ENST00000617339 ANKRD17O75179 2603 aaKnown RBP11.52□□□□□ -0.56
SHROOM1-208ENST00000617339 IGHV3-49A0A0A0MS15 119 aa11.52□□□□□ -0.56
SHROOM1-208ENST00000617339 IGHV1-24A0A0C4DH33 117 aa11.52□□□□□ -0.56
SHROOM1-208ENST00000617339 PPP1R27Q86WC6 154 aa11.52□□□□□ -0.56
SHROOM1-208ENST00000617339 C2CD3Q4AC94 2353 aa11.52□□□□□ -0.57
SHROOM1-208ENST00000617339 GTF2H5Q6ZYL4 71 aa11.52□□□□□ -0.57
SHROOM1-208ENST00000617339 TMEM219Q86XT9 240 aa11.52□□□□□ -0.57
SHROOM1-208ENST00000617339 ST20Q9HBF5 79 aa11.52□□□□□ -0.57
SHROOM1-208ENST00000617339 DPM3Q9P2X0 92 aa11.52□□□□□ -0.57
SHROOM1-208ENST00000617339 H3BUT2 72 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 TEX45Q8NA69 505 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 SMIM12Q96EX1 92 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 IGF2BP2-AS1Q96M15 143 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 DUX5Q96PT3 197 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 A0A1W2PRE2 83 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 SMAD7O15105 426 aaKnown RBP11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 GPR183P32249 361 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 PDPNQ86YL7 162 aa11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 SRSF12Q8WXF0 261 aaKnown RBP11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 PEF1Q9UBV8 284 aaKnown RBP11.51□□□□□ -0.57
SHROOM1-208ENST00000617339 VWC2LB2RUY7 222 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 IGLV2-23P01705 113 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 MC5RP33032 325 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 TAS2R45P59539 299 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 PRR20EP86478 221 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 PRR20CP86479 221 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 PRR20DP86480 221 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 PRR20BP86481 221 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 PRR20AP86496 221 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 TMEM177Q53S58 311 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 FER1L6-AS1Q8NA97 138 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 PAXXQ9BUH6 204 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 SIGLEC9Q9Y336 463 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 TM4SF20Q53R12 229 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 OR1N2Q8NGR9 330 aa11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 NEU4Q8WWR8 484 aaPredicted RBP11.5□□□□□ -0.57
SHROOM1-208ENST00000617339 C8orf88P0DMB2 117 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 TMEM167AQ8TBQ9 72 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 GRAMD2BQ96HH9 432 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 TRAV8-1A0A0A6YYK1 113 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 PGPA6NDG6 321 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 FAM90A9PA6NNJ1 464 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 SLC25A5P05141 298 aaKnown RBP11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 C2orf83Q53S99 150 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 BPIFA4PQ86YQ2 179 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 RASL11BQ9BPW5 248 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 MAP1LC3CQ9BXW4 147 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 ZNF257Q9Y2Q1 563 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 ZFP36P26651 326 aaKnown RBP11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 DLX6P56179 175 aa11.49□□□□□ -0.57
SHROOM1-208ENST00000617339 TRAV40A0A0B4J280 105 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 CD5LO43866 347 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 SMAGPQ0VAQ4 97 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 FAM120AOSQ5T036 256 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 PATE2Q6UY27 113 aa11.48□□□□□ -0.57
SHROOM1-208ENST00000617339 C7orf69Q9H7B7 122 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms