RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ELOA3CA0A087WX78 387 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-205ENST00000595028 ZNF705FA8MVS1 300 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-205ENST00000595028 E5RGE8 158 aa10.9□□□□□ -0.66
TRIM28-205ENST00000595028 ZNF705DP0CH99 300 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-205ENST00000595028 ZNF705BP0CI00 300 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-205ENST00000595028 CYCSP99999 105 aaKnown RBP10.9□□□□□ -0.66
TRIM28-205ENST00000595028 OPCMLQ14982 345 aa10.9□□□□□ -0.66
TRIM28-205ENST00000595028 ATP6V1FQ16864 119 aa10.9□□□□□ -0.66
TRIM28-205ENST00000595028 LRRC37A5PQ49AS3 106 aa10.9□□□□□ -0.66
TRIM28-205ENST00000595028 C10orf113Q5VZT2 155 aa10.9□□□□□ -0.66
TRIM28-205ENST00000595028 ZNF738Q8NE65 137 aa10.9□□□□□ -0.66
TRIM28-205ENST00000595028 OR5AC2Q9NZP5 309 aa10.9□□□□□ -0.66
TRIM28-205ENST00000595028 H0YIZ8 118 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 SSNA1O43805 119 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 CXCL2P19875 107 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 CXCL3P19876 107 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 FGF7P21781 194 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 RPL29P47914 159 aaKnown RBP10.89□□□□□ -0.67
TRIM28-205ENST00000595028 CNN1P51911 297 aaKnown RBP10.89□□□□□ -0.67
TRIM28-205ENST00000595028 H2BFSP57053 126 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 MORN5Q5VZ52 161 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 LCN15Q6UWW0 184 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 AMTNQ6UX39 209 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 Q6ZRG5 221 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 NEU1Q99519 415 aa10.89□□□□□ -0.67
TRIM28-205ENST00000595028 DUSP14O95147 198 aaKnown RBP10.88□□□□□ -0.67
TRIM28-205ENST00000595028 RLN2P04090 185 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 HLA-DMBP28068 263 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 B2MP61769 119 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 BPIFA4PQ86YQ2 179 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 OR1L4Q8NGR5 311 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 CHAC2Q8WUX2 184 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 PFDN5Q99471 154 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 SLC25A31Q9H0C2 315 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 DNAJC4Q9NNZ3 241 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 SLC39A9Q9NUM3 307 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 PXMP4Q9Y6I8 212 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 VPS13DQ5THJ4 4388 aa10.88□□□□□ -0.67
TRIM28-205ENST00000595028 IGHV3OR16-12A0A075B7B8 117 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 MPDU1O75352 247 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 IGLC2P0DOY2 106 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 OR11H7Q8NGC8 314 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 OR5C1Q8NGR4 320 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 LRRC20Q8TCA0 184 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 PPP1R1CQ8WVI7 109 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 SLC50A1Q9BRV3 221 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 NPCDR1Q9BY65 106 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 ZNF331Q9NQX6 463 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-205ENST00000595028 CELA1Q9UNI1 258 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 GOLT1BQ9Y3E0 138 aa10.87□□□□□ -0.67
TRIM28-205ENST00000595028 ABCA13Q86UQ4 5058 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 SMIM9A6NGZ8 99 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 C11orf94C9JXX5 98 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 HIST1H1AQ02539 215 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-205ENST00000595028 NHLH2Q02577 135 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 PSG3Q16557 428 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 Q6ZTC4 211 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 OR8A1Q8NGG7 326 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 C2CD4CQ8TF44 421 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 IGF2BP2-AS1Q96M15 143 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 DNAH6Q9C0G6 4158 aa10.86□□□□□ -0.67
TRIM28-205ENST00000595028 H3BTX0 84 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 BOLA2-SMG1P6H3BVE0 249 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 SLC17A3O00476 420 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 INSP01308 110 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 AMBPP02760 352 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 SNRPCP09234 159 aaKnown RBP10.85□□□□□ -0.67
TRIM28-205ENST00000595028 PET100P0DJ07 73 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 CLINT1Q14677 625 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 SPINK13Q1W4C9 94 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 C1orf158Q8N1D5 194 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 THAP6Q8TBB0 222 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 RPUSD4Q96CM3 377 aaKnown RBP10.85□□□□□ -0.67
TRIM28-205ENST00000595028 RFNGQ9Y644 331 aa10.85□□□□□ -0.67
TRIM28-205ENST00000595028 TRAV5A0A0B4J249 113 aa10.84□□□□□ -0.67
TRIM28-205ENST00000595028 TMEM189A5PLL7 270 aa10.84□□□□□ -0.67
TRIM28-205ENST00000595028 H3BQ15 152 aa10.84□□□□□ -0.67
TRIM28-205ENST00000595028 M0R2Z0 102 aa10.84□□□□□ -0.67
TRIM28-205ENST00000595028 MPC2O95563 127 aa10.84□□□□□ -0.67
TRIM28-205ENST00000595028 LY6G6CO95867 125 aa10.84□□□□□ -0.67
TRIM28-205ENST00000595028 PTTG1O95997 202 aa10.84□□□□□ -0.67
TRIM28-205ENST00000595028 TRAV10A0A0B4J240 114 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 CRXO43186 299 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-205ENST00000595028 HBE1P02100 147 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 C12orf74Q32Q52 190 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 GCSAMLQ5JQS6 135 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 BAP18Q8IXM2 172 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 RNF126Q9BV68 326 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 KCNIP2Q9NS61 270 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 ALG5Q9Y673 324 aa10.83□□□□□ -0.68
TRIM28-205ENST00000595028 LOC102723971A0A1B0GUV8 181 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 PRB4P10163 310 aaPredicted RBP10.82□□□□□ -0.68
TRIM28-205ENST00000595028 EMP1P54849 157 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 TCTAP57738 103 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 GUK1Q16774 197 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 ZNF767PQ75MW2 155 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 SAT2Q96F10 170 aaPredicted RBP10.82□□□□□ -0.68
TRIM28-205ENST00000595028 ATP5SQ99766 215 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 TMEM208Q9BTX3 173 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 WDR61Q9GZS3 305 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms