RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 SMIM3Q9BZL3 60 aa10.14□□□□□ -0.79
CLIP3-205ENST00000592017 HSPB11Q9Y547 144 aa10.14□□□□□ -0.79
CLIP3-205ENST00000592017 TRAV8-2A0A0B4J237 113 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 TRAV5A0A0B4J249 113 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 CXorf65A6NEN9 183 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 H3BTX0 84 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 PRB4P10163 310 aaPredicted RBP10.13□□□□□ -0.79
CLIP3-205ENST00000592017 HLA-DMBP28068 263 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 RPL12P30050 165 aaKnown RBP10.13□□□□□ -0.79
CLIP3-205ENST00000592017 FAM78BQ5VT40 261 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 OR11H7Q8NGC8 314 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 ATP5SQ99766 215 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 C1QTNF4Q9BXJ3 329 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 BIRC6Q9NR09 4857 aa10.13□□□□□ -0.79
CLIP3-205ENST00000592017 A0A0J9YX75 114 aa10.12□□□□□ -0.79
CLIP3-205ENST00000592017 MRPS12O15235 138 aaKnown RBP10.12□□□□□ -0.79
CLIP3-205ENST00000592017 JTBO76095 146 aa10.12□□□□□ -0.79
CLIP3-205ENST00000592017 GCSAMLQ5JQS6 135 aa10.12□□□□□ -0.79
CLIP3-205ENST00000592017 SPATA31B1PQ5VZV4 182 aa10.12□□□□□ -0.79
CLIP3-205ENST00000592017 ZNF709Q8N972 641 aa10.12□□□□□ -0.79
CLIP3-205ENST00000592017 WDR61Q9GZS3 305 aaKnown RBP10.12□□□□□ -0.79
CLIP3-205ENST00000592017 SLC35B3Q9H1N7 401 aa10.12□□□□□ -0.79
CLIP3-205ENST00000592017 ZNF705DP0CH99 300 aaPredicted RBP10.11□□□□□ -0.79
CLIP3-205ENST00000592017 ZNF705BP0CI00 300 aaPredicted RBP10.11□□□□□ -0.79
CLIP3-205ENST00000592017 LCN15Q6UWW0 184 aa10.11□□□□□ -0.79
CLIP3-205ENST00000592017 CHAC2Q8WUX2 184 aa10.11□□□□□ -0.79
CLIP3-205ENST00000592017 MFFQ9GZY8 342 aa10.11□□□□□ -0.79
CLIP3-205ENST00000592017 C11orf68Q9H3H3 251 aaKnown RBP10.11□□□□□ -0.79
CLIP3-205ENST00000592017 KCNIP2Q9NS61 270 aa10.11□□□□□ -0.79
CLIP3-205ENST00000592017 IGHV3OR16-12A0A075B7B8 117 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 IGHV4-28A0A0C4DH34 117 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 C17orf112F2Z3M2 114 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 SLC17A3O00476 420 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 IFNA5P01569 189 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 CXCL2P19875 107 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 CNN1P51911 297 aaKnown RBP10.1□□□□□ -0.79
CLIP3-205ENST00000592017 PSG9Q00887 426 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 HIST1H1AQ02539 215 aaPredicted RBP10.1□□□□□ -0.79
CLIP3-205ENST00000592017 CEMP1Q6PRD7 247 aaPredicted RBP10.1□□□□□ -0.79
CLIP3-205ENST00000592017 CSNK1G2-AS1Q8NCQ2 148 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 SLC50A1Q9BRV3 221 aa10.1□□□□□ -0.79
CLIP3-205ENST00000592017 ZNF705EA8MWA4 302 aaPredicted RBP10.09□□□□□ -0.79
CLIP3-205ENST00000592017 H3BQ15 152 aa10.09□□□□□ -0.79
CLIP3-205ENST00000592017 DUSP14O95147 198 aaKnown RBP10.09□□□□□ -0.79
CLIP3-205ENST00000592017 IGLC2P0DOY2 106 aa10.09□□□□□ -0.79
CLIP3-205ENST00000592017 MIFP14174 115 aa10.09□□□□□ -0.79
CLIP3-205ENST00000592017 PSG3Q16557 428 aa10.09□□□□□ -0.79
CLIP3-205ENST00000592017 Q8NAQ8 132 aa10.09□□□□□ -0.79
CLIP3-205ENST00000592017 SCGB1C1Q8TD33 95 aa10.09□□□□□ -0.79
CLIP3-205ENST00000592017 ZNF331Q9NQX6 463 aaPredicted RBP10.09□□□□□ -0.79
CLIP3-205ENST00000592017 X6R8D5 127 aa10.09□□□□□ -0.79
CLIP3-205ENST00000592017 NUPR2A6NF83 97 aa10.08□□□□□ -0.8
CLIP3-205ENST00000592017 GIPP09681 153 aaPredicted RBP10.08□□□□□ -0.8
CLIP3-205ENST00000592017 NANOS2P60321 138 aaKnown RBP10.08□□□□□ -0.8
CLIP3-205ENST00000592017 RHOBP62745 196 aa10.08□□□□□ -0.8
CLIP3-205ENST00000592017 OXA1LQ15070 435 aa10.08□□□□□ -0.8
CLIP3-205ENST00000592017 C11orf45Q8TAV5 145 aa10.08□□□□□ -0.8
CLIP3-205ENST00000592017 RPUSD4Q96CM3 377 aaKnown RBP10.08□□□□□ -0.8
CLIP3-205ENST00000592017 CLUHP3Q96NS8 147 aa10.08□□□□□ -0.8
CLIP3-205ENST00000592017 HRH4Q9H3N8 390 aa10.08□□□□□ -0.8
CLIP3-205ENST00000592017 AGRNO00468 2067 aa10.08□□□□□ -0.8
CLIP3-205ENST00000592017 VPS13DQ5THJ4 4388 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 M0R2Z0 102 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 RBMY1A1P0DJD3 496 aaKnown RBP10.07□□□□□ -0.8
CLIP3-205ENST00000592017 RBMY1CP0DJD4 496 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 PYYP10082 97 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 RBMY1FQ15415 496 aaKnown RBP10.07□□□□□ -0.8
CLIP3-205ENST00000592017 GUK1Q16774 197 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 SPINK13Q1W4C9 94 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 FFAR4Q5NUL3 377 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 MIR17HGQ75NE6 70 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 OR8A1Q8NGG7 326 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 WFDC1Q9HC57 220 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 PPP1R14DQ9NXH3 145 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 ZNF586Q9NXT0 402 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 GOLT1BQ9Y3E0 138 aa10.07□□□□□ -0.8
CLIP3-205ENST00000592017 ZNF705FA8MVS1 300 aaPredicted RBP10.06□□□□□ -0.8
CLIP3-205ENST00000592017 Q5BKY6 102 aa10.06□□□□□ -0.8
CLIP3-205ENST00000592017 AMTNQ6UX39 209 aa10.06□□□□□ -0.8
CLIP3-205ENST00000592017 PHLDA1Q8WV24 401 aaPredicted RBP10.06□□□□□ -0.8
CLIP3-205ENST00000592017 BLNKQ8WV28 456 aa10.06□□□□□ -0.8
CLIP3-205ENST00000592017 LINC00476Q8WZB0 136 aa10.06□□□□□ -0.8
CLIP3-205ENST00000592017 SLC25A2Q9BXI2 301 aa10.06□□□□□ -0.8
CLIP3-205ENST00000592017 TMEM14CQ9P0S9 112 aa10.06□□□□□ -0.8
CLIP3-205ENST00000592017 TIMM9Q9Y5J7 89 aa10.06□□□□□ -0.8
CLIP3-205ENST00000592017 FXYD6-FXYD2A0A087WZ82 144 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 A8MTW9 85 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 BOLA2-SMG1P6H3BVE0 249 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 HIST1H1EP10412 219 aaKnown RBP10.05□□□□□ -0.8
CLIP3-205ENST00000592017 ZNF705AQ6ZN79 300 aaPredicted RBP10.05□□□□□ -0.8
CLIP3-205ENST00000592017 BAP18Q8IXM2 172 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 ASB13Q8WXK3 278 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 SAT2Q96F10 170 aaPredicted RBP10.05□□□□□ -0.8
CLIP3-205ENST00000592017 TMEM208Q9BTX3 173 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 MRPL32Q9BYC8 188 aaKnown RBP10.05□□□□□ -0.8
CLIP3-205ENST00000592017 FUT9Q9Y231 359 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 RFNGQ9Y644 331 aa10.05□□□□□ -0.8
CLIP3-205ENST00000592017 TRBV19A0A075B6N1 114 aa10.04□□□□□ -0.8
CLIP3-205ENST00000592017 TRAV12-2A0A075B6T6 113 aa10.04□□□□□ -0.8
CLIP3-205ENST00000592017 PRAC2D3DTV9 90 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms