RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TRAV5A0A0B4J249 113 aa14.2□□□□□ -0.14
SS18-209ENST00000578595 A0A0J9YX75 114 aa14.2□□□□□ -0.14
SS18-209ENST00000578595 C17orf112F2Z3M2 114 aa14.2□□□□□ -0.14
SS18-209ENST00000578595 IFNA5P01569 189 aa14.2□□□□□ -0.14
SS18-209ENST00000578595 HLA-DMBP28068 263 aa14.2□□□□□ -0.14
SS18-209ENST00000578595 OR11H7Q8NGC8 314 aa14.2□□□□□ -0.14
SS18-209ENST00000578595 WDR61Q9GZS3 305 aaKnown RBP14.2□□□□□ -0.14
SS18-209ENST00000578595 TRAV8-2A0A0B4J237 113 aa14.19□□□□□ -0.14
SS18-209ENST00000578595 ZNF705DP0CH99 300 aaPredicted RBP14.19□□□□□ -0.14
SS18-209ENST00000578595 ZNF705BP0CI00 300 aaPredicted RBP14.19□□□□□ -0.14
SS18-209ENST00000578595 PRB4P10163 310 aaPredicted RBP14.19□□□□□ -0.14
SS18-209ENST00000578595 SCGB1C1Q8TD33 95 aa14.19□□□□□ -0.14
SS18-209ENST00000578595 SLC50A1Q9BRV3 221 aa14.19□□□□□ -0.14
SS18-209ENST00000578595 MFFQ9GZY8 342 aa14.19□□□□□ -0.14
SS18-209ENST00000578595 SLC35B3Q9H1N7 401 aa14.19□□□□□ -0.14
SS18-209ENST00000578595 PSG9Q00887 426 aa14.18□□□□□ -0.14
SS18-209ENST00000578595 HIST1H1AQ02539 215 aaPredicted RBP14.18□□□□□ -0.14
SS18-209ENST00000578595 GCSAMLQ5JQS6 135 aa14.18□□□□□ -0.14
SS18-209ENST00000578595 PPP1R14DQ9NXH3 145 aa14.18□□□□□ -0.14
SS18-209ENST00000578595 IGHV4-28A0A0C4DH34 117 aa14.17□□□□□ -0.14
SS18-209ENST00000578595 MRPS12O15235 138 aaKnown RBP14.17□□□□□ -0.14
SS18-209ENST00000578595 DUSP14O95147 198 aaKnown RBP14.17□□□□□ -0.14
SS18-209ENST00000578595 CXCL2P19875 107 aa14.17□□□□□ -0.14
SS18-209ENST00000578595 CNN1P51911 297 aaKnown RBP14.17□□□□□ -0.14
SS18-209ENST00000578595 RHOBP62745 196 aa14.17□□□□□ -0.14
SS18-209ENST00000578595 PSG3Q16557 428 aa14.17□□□□□ -0.14
SS18-209ENST00000578595 CHAC2Q8WUX2 184 aa14.17□□□□□ -0.14
SS18-209ENST00000578595 C11orf68Q9H3H3 251 aaKnown RBP14.17□□□□□ -0.14
SS18-209ENST00000578595 SLC17A3O00476 420 aa14.16□□□□□ -0.14
SS18-209ENST00000578595 MIFP14174 115 aa14.16□□□□□ -0.14
SS18-209ENST00000578595 RPUSD4Q96CM3 377 aaKnown RBP14.16□□□□□ -0.14
SS18-209ENST00000578595 FFAR4Q5NUL3 377 aa14.15□□□□□ -0.14
SS18-209ENST00000578595 CSNK1G2-AS1Q8NCQ2 148 aa14.15□□□□□ -0.14
SS18-209ENST00000578595 C11orf45Q8TAV5 145 aa14.15□□□□□ -0.14
SS18-209ENST00000578595 ZNF331Q9NQX6 463 aaPredicted RBP14.15□□□□□ -0.14
SS18-209ENST00000578595 ZNF705EA8MWA4 302 aaPredicted RBP14.14□□□□□ -0.15
SS18-209ENST00000578595 H3BQ15 152 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 GIPP09681 153 aaPredicted RBP14.14□□□□□ -0.15
SS18-209ENST00000578595 IGLC2P0DOY2 106 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 NANOS2P60321 138 aaKnown RBP14.14□□□□□ -0.15
SS18-209ENST00000578595 SPINK13Q1W4C9 94 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 Q8NAQ8 132 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 OR8A1Q8NGG7 326 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 BLNKQ8WV28 456 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 TMEM208Q9BTX3 173 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 HRH4Q9H3N8 390 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 GOLT1BQ9Y3E0 138 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 X6R8D5 127 aa14.14□□□□□ -0.15
SS18-209ENST00000578595 NUPR2A6NF83 97 aa14.13□□□□□ -0.15
SS18-209ENST00000578595 M0R2Z0 102 aa14.13□□□□□ -0.15
SS18-209ENST00000578595 PYYP10082 97 aa14.13□□□□□ -0.15
SS18-209ENST00000578595 GUK1Q16774 197 aa14.13□□□□□ -0.15
SS18-209ENST00000578595 MIR17HGQ75NE6 70 aa14.13□□□□□ -0.15
SS18-209ENST00000578595 CLUHP3Q96NS8 147 aa14.13□□□□□ -0.15
SS18-209ENST00000578595 TIMM9Q9Y5J7 89 aa14.13□□□□□ -0.15
SS18-209ENST00000578595 FXYD6-FXYD2A0A087WZ82 144 aa14.12□□□□□ -0.15
SS18-209ENST00000578595 ZNF705FA8MVS1 300 aaPredicted RBP14.12□□□□□ -0.15
SS18-209ENST00000578595 OXA1LQ15070 435 aa14.12□□□□□ -0.15
SS18-209ENST00000578595 MRPL32Q9BYC8 188 aaKnown RBP14.12□□□□□ -0.15
SS18-209ENST00000578595 ZNF586Q9NXT0 402 aa14.12□□□□□ -0.15
SS18-209ENST00000578595 BOLA2-SMG1P6H3BVE0 249 aa14.11□□□□□ -0.15
SS18-209ENST00000578595 RBMY1A1P0DJD3 496 aaKnown RBP14.11□□□□□ -0.15
SS18-209ENST00000578595 RBMY1CP0DJD4 496 aa14.11□□□□□ -0.15
SS18-209ENST00000578595 EMP1P54849 157 aa14.11□□□□□ -0.15
SS18-209ENST00000578595 RBMY1FQ15415 496 aaKnown RBP14.11□□□□□ -0.15
SS18-209ENST00000578595 OR10J6PQ8NGY7 276 aa14.11□□□□□ -0.15
SS18-209ENST00000578595 SLC25A2Q9BXI2 301 aa14.11□□□□□ -0.15
SS18-209ENST00000578595 WFDC1Q9HC57 220 aa14.11□□□□□ -0.15
SS18-209ENST00000578595 CSMD3Q7Z407 3707 aa14.11□□□□□ -0.15
SS18-209ENST00000578595 OR7C2O60412 319 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 JTBO76095 146 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 INSP01308 110 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 AMBPP02760 352 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 HIST1H1EP10412 219 aaKnown RBP14.1□□□□□ -0.15
SS18-209ENST00000578595 AMTNQ6UX39 209 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 BAP18Q8IXM2 172 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 INO80EQ8NBZ0 244 aaPredicted RBP14.1□□□□□ -0.15
SS18-209ENST00000578595 PHLDA1Q8WV24 401 aaPredicted RBP14.1□□□□□ -0.15
SS18-209ENST00000578595 ASB13Q8WXK3 278 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 TMEM14CQ9P0S9 112 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 FUT9Q9Y231 359 aa14.1□□□□□ -0.15
SS18-209ENST00000578595 TRBV19A0A075B6N1 114 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 HBE1P02100 147 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 OR10J4P0C629 311 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 ZNF266Q14584 549 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 OR2T35Q8NGX2 323 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 IGF2BP2-AS1Q96M15 143 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 PAXXQ9BUH6 204 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 OR51M1Q9H341 326 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 AAMDCQ9H7C9 122 aa14.09□□□□□ -0.15
SS18-209ENST00000578595 KLK5Q9Y337 293 aaPredicted RBP14.09□□□□□ -0.15
SS18-209ENST00000578595 TRAV12-2A0A075B6T6 113 aa14.08□□□□□ -0.16
SS18-209ENST00000578595 Q5BKY6 102 aa14.08□□□□□ -0.16
SS18-209ENST00000578595 CEMP1Q6PRD7 247 aaPredicted RBP14.08□□□□□ -0.16
SS18-209ENST00000578595 ZNF705AQ6ZN79 300 aaPredicted RBP14.08□□□□□ -0.16
SS18-209ENST00000578595 HSD17B11Q8NBQ5 300 aa14.08□□□□□ -0.16
SS18-209ENST00000578595 SAT2Q96F10 170 aaPredicted RBP14.08□□□□□ -0.16
SS18-209ENST00000578595 AQP10Q96PS8 301 aa14.08□□□□□ -0.16
SS18-209ENST00000578595 RFNGQ9Y644 331 aa14.08□□□□□ -0.16
SS18-209ENST00000578595 A8MTW9 85 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms