RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SIGMAR1Q99720 223 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 TPSG1Q9NRR2 321 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 SRSF6Q13247 344 aaKnown RBP9.19□□□□□ -0.94
CLN3-238ENST00000569430 TMEM200BQ69YZ2 307 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 ZNF503Q96F45 646 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 NDUFA4L2Q9NRX3 87 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 IGKV2-40A0A087WW87 121 aaPredicted RBP9.19□□□□□ -0.94
CLN3-238ENST00000569430 A0A1B0GV72 72 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 LYNX1G3V0Z9 82 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 IGKV2D-40P01614 121 aaPredicted RBP9.19□□□□□ -0.94
CLN3-238ENST00000569430 LYNX1P0DP58 116 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 GDF5OSQ5U4N7 250 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 GAFA1Q96PS6 74 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 TMEM133Q9H2Q1 129 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 C2orf70A6NJV1 201 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 COX8AP10176 69 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 MFAP4P55083 255 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 FAM71F2Q6NXP2 309 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 LCNL1Q6ZST4 164 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 ASCL5Q7RTU5 278 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 Q86TA4 180 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 RPRMLQ8N4K4 120 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 OR5A1Q8NGJ0 315 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 RNF125Q96EQ8 232 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 CEP295Q9C0D2 2601 aa9.19□□□□□ -0.94
CLN3-238ENST00000569430 CEP192Q8TEP8 1941 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 OR11H12B2RN74 326 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 SMIM17P0DL12 118 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 PSG3Q16557 428 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 OR11H1Q8NG94 326 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 OR11H2Q8NH07 326 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 TECTAO75443 2155 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 TMEM30BQ3MIR4 351 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 ZNF788Q6ZQV5 615 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 OR9G4Q8NGQ1 327 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 SLC25A15Q9Y619 301 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 PPIAL4CA0A0B4J2A2 164 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 C17orf100A8MU93 164 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 SMAD7O15105 426 aaKnown RBP9.18□□□□□ -0.94
CLN3-238ENST00000569430 APOMO95445 188 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 PPIAL4GP0DN37 164 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 CEACAM3P40198 252 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 MEF2CQ06413 473 aaPredicted RBP9.18□□□□□ -0.94
CLN3-238ENST00000569430 Q6AWC8 147 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 ZNF479Q96JC4 524 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 IGF2BP2-AS1Q96M15 143 aa9.18□□□□□ -0.94
CLN3-238ENST00000569430 RALYQ9UKM9 306 aaKnown RBP9.18□□□□□ -0.94
CLN3-238ENST00000569430 LOC105371242A0A075B767 164 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 IGLV2-8P01709 118 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 PATE2Q6UY27 113 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 FAM167A-AS1Q96KT0 104 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 MRPL16Q9NX20 251 aaKnown RBP9.17□□□□□ -0.94
CLN3-238ENST00000569430 FAM90A27PA6NNH2 459 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 KLF5Q13887 457 aaPredicted RBP9.17□□□□□ -0.94
CLN3-238ENST00000569430 TMEM78Q5T7P6 136 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 ZC2HC1BQ5TFG8 222 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 DEFB104AQ8WTQ1 72 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 ANKHD1Q8IWZ3 2542 aaKnown RBP9.17□□□□□ -0.94
CLN3-238ENST00000569430 A0A1B0GW15 77 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 C9orf118A6NHY6 69 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 CNTFRP26992 372 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 RBPJQ06330 500 aa9.17□□□□□ -0.94
CLN3-238ENST00000569430 ANKRD39Q53RE8 183 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 Q8N7P7 452 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 WIPF2Q8TF74 440 aaPredicted RBP9.16□□□□□ -0.94
CLN3-238ENST00000569430 GTSF1Q8WW33 167 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 TRGV9Q99603 122 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 PLSCR4Q9NRQ2 329 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 PCP2Q8IVA1 136 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 TMEM238C9JI98 176 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 M0R381 172 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 RPS20P60866 119 aaKnown RBP9.16□□□□□ -0.94
CLN3-238ENST00000569430 BSPH1Q075Z2 132 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 LYPD2Q6UXB3 125 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 ZNF747Q9BV97 191 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 CSTL1Q9H114 145 aa9.16□□□□□ -0.94
CLN3-238ENST00000569430 E7EUB6 86 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 WISP2O76076 250 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 CD3EP07766 207 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 RHOGP84095 191 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 ETDBQ3ZM63 59 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 ADAMTSL5Q6ZMM2 481 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 C1orf229Q6ZS94 237 aaPredicted RBP9.15□□□□□ -0.94
CLN3-238ENST00000569430 C17orf77Q96MU5 243 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 C2CD3Q4AC94 2353 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 SPENQ96T58 3664 aaKnown RBP9.15□□□□□ -0.94
CLN3-238ENST00000569430 K7ERJ3 54 aa9.15□□□□□ -0.94
CLN3-238ENST00000569430 MRPL36Q9P0J6 103 aaKnown RBP9.15□□□□□ -0.94
CLN3-238ENST00000569430 H3BRM9 83 aa9.15□□□□□ -0.95
CLN3-238ENST00000569430 K7EMI3 77 aa9.15□□□□□ -0.95
CLN3-238ENST00000569430 DPM2O94777 84 aa9.15□□□□□ -0.95
CLN3-238ENST00000569430 IGKCP01834 107 aa9.15□□□□□ -0.95
CLN3-238ENST00000569430 C8orf49Q96NF6 230 aa9.15□□□□□ -0.95
CLN3-238ENST00000569430 DDB2Q92466 427 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 VKORC1Q9BQB6 163 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 SIGLEC8Q9NYZ4 499 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 LINC00322Q6ZN03 302 aaPredicted RBP9.14□□□□□ -0.95
CLN3-238ENST00000569430 TTTY13Q9BZ97 58 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 SH2D1AO60880 128 aa9.14□□□□□ -0.95
CLN3-238ENST00000569430 SP9P0CG40 484 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms