RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SPATA31B1PQ5VZV4 182 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 CEMP1Q6PRD7 247 aaPredicted RBP10.87□□□□□ -0.67
VPS39-210ENST00000568357 Q6ZRG5 221 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 S100A7AQ86SG5 101 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 C11orf45Q8TAV5 145 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 CHAC2Q8WUX2 184 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 PPP1R1CQ8WVI7 109 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 SLC35B3Q9H1N7 401 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 SLC39A9Q9NUM3 307 aa10.87□□□□□ -0.67
VPS39-210ENST00000568357 JTBO76095 146 aa10.86□□□□□ -0.67
VPS39-210ENST00000568357 ZNF705DP0CH99 300 aaPredicted RBP10.86□□□□□ -0.67
VPS39-210ENST00000568357 ZNF705BP0CI00 300 aaPredicted RBP10.86□□□□□ -0.67
VPS39-210ENST00000568357 CXCL3P19876 107 aa10.86□□□□□ -0.67
VPS39-210ENST00000568357 FGF7P21781 194 aa10.86□□□□□ -0.67
VPS39-210ENST00000568357 OPCMLQ14982 345 aa10.86□□□□□ -0.67
VPS39-210ENST00000568357 OR5C1Q8NGR4 320 aa10.86□□□□□ -0.67
VPS39-210ENST00000568357 SLC25A31Q9H0C2 315 aa10.86□□□□□ -0.67
VPS39-210ENST00000568357 MPC2O95563 127 aa10.85□□□□□ -0.67
VPS39-210ENST00000568357 PRB4P10163 310 aaPredicted RBP10.85□□□□□ -0.67
VPS39-210ENST00000568357 B2MP61769 119 aa10.85□□□□□ -0.67
VPS39-210ENST00000568357 AMTNQ6UX39 209 aa10.85□□□□□ -0.67
VPS39-210ENST00000568357 ZNF705AQ6ZN79 300 aaPredicted RBP10.85□□□□□ -0.67
VPS39-210ENST00000568357 PHLDA1Q8WV24 401 aaPredicted RBP10.85□□□□□ -0.67
VPS39-210ENST00000568357 RNF24Q9Y225 148 aa10.85□□□□□ -0.67
VPS39-210ENST00000568357 ALG5Q9Y673 324 aa10.85□□□□□ -0.67
VPS39-210ENST00000568357 PXMP4Q9Y6I8 212 aa10.85□□□□□ -0.67
VPS39-210ENST00000568357 NUPR2A6NF83 97 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 A8MTW9 85 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 H3BQ15 152 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 H3BTX0 84 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 CNN1P51911 297 aaKnown RBP10.84□□□□□ -0.67
VPS39-210ENST00000568357 CLINT1Q14677 625 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 BPIFA4PQ86YQ2 179 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 OR1L4Q8NGR5 311 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 THAP6Q8TBB0 222 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 LRRC20Q8TCA0 184 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 NPCDR1Q9BY65 106 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 KIAA1109Q2LD37 5005 aa10.84□□□□□ -0.67
VPS39-210ENST00000568357 ZNF705FA8MVS1 300 aaPredicted RBP10.83□□□□□ -0.68
VPS39-210ENST00000568357 PTTG1O95997 202 aa10.83□□□□□ -0.68
VPS39-210ENST00000568357 IGLC2P0DOY2 106 aa10.83□□□□□ -0.68
VPS39-210ENST00000568357 PSG3Q16557 428 aa10.83□□□□□ -0.68
VPS39-210ENST00000568357 GCSAMLQ5JQS6 135 aa10.83□□□□□ -0.68
VPS39-210ENST00000568357 ZNF738Q8NE65 137 aa10.83□□□□□ -0.68
VPS39-210ENST00000568357 MFFQ9GZY8 342 aa10.83□□□□□ -0.68
VPS39-210ENST00000568357 ZNF331Q9NQX6 463 aaPredicted RBP10.83□□□□□ -0.68
VPS39-210ENST00000568357 IGHV3OR16-12A0A075B7B8 117 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 SLC17A3O00476 420 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 MPDU1O75352 247 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 DUSP14O95147 198 aaKnown RBP10.82□□□□□ -0.68
VPS39-210ENST00000568357 LCN15Q6UWW0 184 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 C1orf158Q8N1D5 194 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 OR11H7Q8NGC8 314 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 SAT2Q96F10 170 aaPredicted RBP10.82□□□□□ -0.68
VPS39-210ENST00000568357 PFDN5Q99471 154 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 NEU1Q99519 415 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 HRH4Q9H3N8 390 aa10.82□□□□□ -0.68
VPS39-210ENST00000568357 CXCL2P19875 107 aa10.81□□□□□ -0.68
VPS39-210ENST00000568357 OR8A1Q8NGG7 326 aa10.81□□□□□ -0.68
VPS39-210ENST00000568357 RPUSD4Q96CM3 377 aaKnown RBP10.81□□□□□ -0.68
VPS39-210ENST00000568357 WDR61Q9GZS3 305 aaKnown RBP10.81□□□□□ -0.68
VPS39-210ENST00000568357 MBD2Q9UBB5 411 aa10.81□□□□□ -0.68
VPS39-210ENST00000568357 CELA1Q9UNI1 258 aa10.81□□□□□ -0.68
VPS39-210ENST00000568357 KLK5Q9Y337 293 aaPredicted RBP10.81□□□□□ -0.68
VPS39-210ENST00000568357 M0R2Z0 102 aa10.8□□□□□ -0.68
VPS39-210ENST00000568357 CRXO43186 299 aaPredicted RBP10.8□□□□□ -0.68
VPS39-210ENST00000568357 RPL12P30050 165 aaKnown RBP10.8□□□□□ -0.68
VPS39-210ENST00000568357 HIST1H1AQ02539 215 aaPredicted RBP10.8□□□□□ -0.68
VPS39-210ENST00000568357 SPINK13Q1W4C9 94 aa10.8□□□□□ -0.68
VPS39-210ENST00000568357 SLC50A1Q9BRV3 221 aa10.8□□□□□ -0.68
VPS39-210ENST00000568357 ZNF586Q9NXT0 402 aa10.8□□□□□ -0.68
VPS39-210ENST00000568357 HSPB11Q9Y547 144 aa10.8□□□□□ -0.68
VPS39-210ENST00000568357 HECTD4Q9Y4D8 3996 aa10.8□□□□□ -0.68
VPS39-210ENST00000568357 SMIM9A6NGZ8 99 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 PRAC2D3DTV9 90 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 PET100P0DJ07 73 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 FCN2Q15485 313 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 C12orf74Q32Q52 190 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 IGF2BP2-AS1Q96M15 143 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 ATP5SQ99766 215 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 GOLT1BQ9Y3E0 138 aa10.79□□□□□ -0.68
VPS39-210ENST00000568357 DNAH10Q8IVF4 4471 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 PRM2P04554 102 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 EMP1P54849 157 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 GUK1Q16774 197 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 Q6ZTC4 211 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 ZNF767PQ75MW2 155 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 SMIM3Q9BZL3 60 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 WFDC1Q9HC57 220 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 TMEM14CQ9P0S9 112 aa10.78□□□□□ -0.68
VPS39-210ENST00000568357 TRBV19A0A075B6N1 114 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 TRAV12-2A0A075B6T6 113 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 PYYP10082 97 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 RHOBP62745 196 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 MIR17HGQ75NE6 70 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 BAP18Q8IXM2 172 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 LINC00476Q8WZB0 136 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 FAM167A-AS1Q96KT0 104 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 SLC25A2Q9BXI2 301 aa10.77□□□□□ -0.69
VPS39-210ENST00000568357 MED28Q9H204 178 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms