RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ATP5SQ99766 215 aa7.17□□□□□ -1.26
CLK3-220ENST00000567992 WFDC1Q9HC57 220 aa7.17□□□□□ -1.26
CLK3-220ENST00000567992 HLA-DRB4X5D2U9 266 aa7.17□□□□□ -1.26
CLK3-220ENST00000567992 TRAV5A0A0B4J249 113 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 H3BMM0 161 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 SPRY2O43597 315 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 CA1P00915 261 aaPredicted RBP7.16□□□□□ -1.26
CLK3-220ENST00000567992 IGLC2P0DOY2 106 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 ID1P41134 155 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 SAMD13Q5VXD3 122 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 IGFL4Q6B9Z1 124 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 FOXI2Q6ZQN5 318 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 Q6ZRG5 221 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 OR1L4Q8NGR5 311 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 LINC00052Q96N35 136 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 PFDN5Q99471 154 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 SMIM3Q9BZL3 60 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 SAV1Q9H4B6 383 aaPredicted RBP7.16□□□□□ -1.26
CLK3-220ENST00000567992 DNAJC4Q9NNZ3 241 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 MED9Q9NWA0 146 aa7.16□□□□□ -1.26
CLK3-220ENST00000567992 F6UB75 175 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 SPP1P10451 314 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 ATF4P18848 351 aaPredicted RBP7.15□□□□□ -1.26
CLK3-220ENST00000567992 HLA-DMBP28068 263 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 RAB14P61106 215 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 FGL1Q08830 312 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 RNF182Q8N6D2 247 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 GATAD1Q8WUU5 269 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 C16orf92Q96LL3 132 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 AQP10Q96PS8 301 aa7.15□□□□□ -1.26
CLK3-220ENST00000567992 DNAH1Q9P2D7 4330 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 RYR2Q92736 4967 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 A0A0J9YX75 114 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 RNF222A6NCQ9 220 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 A8MTW9 85 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 H3BQ15 152 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 SLC17A3O00476 420 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 SNRPCP09234 159 aaKnown RBP7.14□□□□□ -1.27
CLK3-220ENST00000567992 SPATA31B1PQ5VZV4 182 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 MORN3Q6PF18 240 aaPredicted RBP7.14□□□□□ -1.27
CLK3-220ENST00000567992 TMUB2Q71RG4 321 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 S100A7AQ86SG5 101 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 BPIFA4PQ86YQ2 179 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 ZNF709Q8N972 641 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 CSNK1G2-AS1Q8NCQ2 148 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 MUC7Q8TAX7 377 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 CLUHP3Q96NS8 147 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 PARD6GQ9BYG4 376 aaPredicted RBP7.14□□□□□ -1.27
CLK3-220ENST00000567992 RNF24Q9Y225 148 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 RFNGQ9Y644 331 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 ALMS1Q8TCU4 4167 aa7.14□□□□□ -1.27
CLK3-220ENST00000567992 A0A0D9SG52 128 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 H3BTX0 84 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 LCN15Q6UWW0 184 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 AMTNQ6UX39 209 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 MIR17HGQ75NE6 70 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 COMMD7Q86VX2 200 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 SAT2Q96F10 170 aaPredicted RBP7.13□□□□□ -1.27
CLK3-220ENST00000567992 FAM167A-AS1Q96KT0 104 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 SLC25A2Q9BXI2 301 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 HRH4Q9H3N8 390 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 ZNF331Q9NQX6 463 aaPredicted RBP7.13□□□□□ -1.27
CLK3-220ENST00000567992 KCNIP2Q9NS61 270 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 RPRMQ9NS64 109 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 TMEM14CQ9P0S9 112 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 TNFSF18Q9UNG2 199 aa7.13□□□□□ -1.27
CLK3-220ENST00000567992 FXYD6-FXYD2A0A087WZ82 144 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 A0A0J9YWU9 116 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 ZNF705EA8MWA4 302 aaPredicted RBP7.12□□□□□ -1.27
CLK3-220ENST00000567992 C17orf112F2Z3M2 114 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 ARPC5O15511 151 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 IFNA5P01569 189 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 PYYP10082 97 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 PRB4P10163 310 aaPredicted RBP7.12□□□□□ -1.27
CLK3-220ENST00000567992 ZNF345Q14585 488 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 TMEM41BQ5BJD5 291 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 FAM78BQ5VT40 261 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 SLC51BQ86UW2 128 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 OR11H2Q8NH07 326 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 SLC50A1Q9BRV3 221 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 MFFQ9GZY8 342 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 SLC35B3Q9H1N7 401 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 ZNF586Q9NXT0 402 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 CLEC5AQ9NY25 188 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 X6R8D5 127 aa7.12□□□□□ -1.27
CLK3-220ENST00000567992 TRBV19A0A075B6N1 114 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 C3orf84H3BNL1 204 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 NDUFB4O95168 129 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 IGKV3-20P01619 116 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 ZNF705DP0CH99 300 aaPredicted RBP7.11□□□□□ -1.27
CLK3-220ENST00000567992 ZNF705BP0CI00 300 aaPredicted RBP7.11□□□□□ -1.27
CLK3-220ENST00000567992 CNN1P51911 297 aaKnown RBP7.11□□□□□ -1.27
CLK3-220ENST00000567992 PSG3Q16557 428 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 TOR2AQ5JU69 321 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 FFAR4Q5NUL3 377 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 CASC10Q5T4H9 136 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 EBLN2Q6P2I7 272 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 CCDC28AQ8IWP9 274 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 KCNRGQ8N5I3 272 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 Q8NAQ8 132 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms