RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PATE2Q6UY27 113 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 S100A7AQ86SG5 101 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 ARL6Q9H0F7 186 aa11.36□□□□□ -0.59
CLN3-229ENST00000567963 CENPXA8MT69 81 aa11.35□□□□□ -0.59
CLN3-229ENST00000567963 BOLA2-SMG1P6H3BVE0 249 aa11.35□□□□□ -0.59
CLN3-229ENST00000567963 SCGB1D2O95969 90 aa11.35□□□□□ -0.59
CLN3-229ENST00000567963 PSG3Q16557 428 aa11.35□□□□□ -0.59
CLN3-229ENST00000567963 IAH1Q2TAA2 248 aaPredicted RBP11.35□□□□□ -0.59
CLN3-229ENST00000567963 OR8A1Q8NGG7 326 aa11.35□□□□□ -0.59
CLN3-229ENST00000567963 ARV1Q9H2C2 271 aa11.35□□□□□ -0.59
CLN3-229ENST00000567963 NACAE9PAV3 2078 aa11.35□□□□□ -0.59
CLN3-229ENST00000567963 PLAC8L1A1L4L8 177 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 MRPS12O15235 138 aaKnown RBP11.34□□□□□ -0.59
CLN3-229ENST00000567963 TSC22D2O75157 780 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 AZU1P20160 251 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 RHOBP62745 196 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 HIST1H1AQ02539 215 aaPredicted RBP11.34□□□□□ -0.59
CLN3-229ENST00000567963 SLC38A11Q08AI6 406 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 C15orf53Q8NAA6 179 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 LRRC20Q8TCA0 184 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 GSKIPQ9P0R6 139 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 MGAT4CQ9UBM8 478 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 RNF24Q9Y225 148 aa11.34□□□□□ -0.59
CLN3-229ENST00000567963 RCL1Q9Y2P8 373 aaKnown RBP11.34□□□□□ -0.59
CLN3-229ENST00000567963 PLA2G10O15496 165 aa11.33□□□□□ -0.6
CLN3-229ENST00000567963 ASAH1Q13510 395 aa11.33□□□□□ -0.6
CLN3-229ENST00000567963 PXDC1Q5TGL8 231 aa11.33□□□□□ -0.6
CLN3-229ENST00000567963 ZBTB8BQ8NAP8 495 aaPredicted RBP11.33□□□□□ -0.6
CLN3-229ENST00000567963 MITD1Q8WV92 249 aa11.33□□□□□ -0.6
CLN3-229ENST00000567963 LINC01587Q99440 93 aa11.33□□□□□ -0.6
CLN3-229ENST00000567963 PPP1R14DQ9NXH3 145 aa11.33□□□□□ -0.6
CLN3-229ENST00000567963 PCLOQ9Y6V0 5065 aa11.33□□□□□ -0.6
CLN3-229ENST00000567963 C7orf66A4D0T2 115 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 GOSR2O14653 212 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 AGPAT2O15120 278 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 DEFB130BP0DP73 79 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 DEFB130AP0DP74 79 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 ARL16Q0P5N6 197 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 FCN2Q15485 313 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 LINC00305Q7Z4B0 112 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 TMEM256Q8N2U0 113 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 GGACTQ9BVM4 153 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 MBPP02686 304 aaPredicted RBP11.32□□□□□ -0.6
CLN3-229ENST00000567963 MED14OSP0DP75 135 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 PRB4P10163 310 aaPredicted RBP11.32□□□□□ -0.6
CLN3-229ENST00000567963 CXCL2P19875 107 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 TAS2R60P59551 318 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 ZNF546Q86UE3 836 aa11.32□□□□□ -0.6
CLN3-229ENST00000567963 RPUSD4Q96CM3 377 aaKnown RBP11.32□□□□□ -0.6
CLN3-229ENST00000567963 ZNF331Q9NQX6 463 aaPredicted RBP11.32□□□□□ -0.6
CLN3-229ENST00000567963 LYRM1O43325 122 aa11.31□□□□□ -0.6
CLN3-229ENST00000567963 CDKN1BP46527 198 aa11.31□□□□□ -0.6
CLN3-229ENST00000567963 FAM3BP58499 235 aaPredicted RBP11.31□□□□□ -0.6
CLN3-229ENST00000567963 LCN15Q6UWW0 184 aa11.31□□□□□ -0.6
CLN3-229ENST00000567963 TMEM37Q8WXS4 190 aa11.31□□□□□ -0.6
CLN3-229ENST00000567963 SNRPCP09234 159 aaKnown RBP11.3□□□□□ -0.6
CLN3-229ENST00000567963 HTN1P15515 57 aa11.3□□□□□ -0.6
CLN3-229ENST00000567963 SOHLH1Q5JUK2 328 aa11.3□□□□□ -0.6
CLN3-229ENST00000567963 BPIFA4PQ86YQ2 179 aa11.3□□□□□ -0.6
CLN3-229ENST00000567963 C16orf74Q96GX8 76 aa11.3□□□□□ -0.6
CLN3-229ENST00000567963 MGST2Q99735 147 aa11.3□□□□□ -0.6
CLN3-229ENST00000567963 SLC50A1Q9BRV3 221 aa11.3□□□□□ -0.6
CLN3-229ENST00000567963 CBY3A6NI87 242 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 F5H768 121 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 ATP5G1P05496 136 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 ATP5G3P48201 142 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 DEFA1P59665 94 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 DEFA3P59666 94 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 C1orf134Q5TEV5 83 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 ATG101Q9BSB4 218 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 C20orf85Q9H1P6 137 aa11.29□□□□□ -0.6
CLN3-229ENST00000567963 TIMM8BQ9Y5J9 83 aaPredicted RBP11.29□□□□□ -0.6
CLN3-229ENST00000567963 DYNC1H1Q14204 4646 aaKnown RBP11.29□□□□□ -0.6
CLN3-229ENST00000567963 CCSO14618 274 aa11.28□□□□□ -0.6
CLN3-229ENST00000567963 COX7A2P2O60397 106 aa11.28□□□□□ -0.6
CLN3-229ENST00000567963 MORN5Q5VZ52 161 aa11.28□□□□□ -0.6
CLN3-229ENST00000567963 ZNF493Q6ZR52 646 aa11.28□□□□□ -0.6
CLN3-229ENST00000567963 DNAH11Q96DT5 4516 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 L7N2F9 121 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 NUDT3O95989 172 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 VAMP2P63027 116 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 KIR3DS1Q14943 382 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 C10orf113Q5VZT2 155 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 MZT2BQ6NZ67 158 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 RNASE8Q8TDE3 154 aaKnown RBP11.27□□□□□ -0.6
CLN3-229ENST00000567963 C20orf144Q9BQM9 153 aa11.27□□□□□ -0.6
CLN3-229ENST00000567963 H3BTX0 84 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 H7BYZ3 331 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 SLC17A3O00476 420 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 PTTG1O95997 202 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 IGLC2P0DOY2 106 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 OPCMLQ14982 345 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 Q6ZRG5 221 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 TMEM263Q8WUH6 116 aaKnown RBP11.26□□□□□ -0.61
CLN3-229ENST00000567963 SAT2Q96F10 170 aaPredicted RBP11.26□□□□□ -0.61
CLN3-229ENST00000567963 DNAJC4Q9NNZ3 241 aa11.26□□□□□ -0.61
CLN3-229ENST00000567963 NOP10Q9NPE3 64 aaKnown RBP11.26□□□□□ -0.61
CLN3-229ENST00000567963 LSM5Q9Y4Y9 91 aaKnown RBP11.26□□□□□ -0.61
CLN3-229ENST00000567963 FAM25EA8MYX2 175 aa11.25□□□□□ -0.61
CLN3-229ENST00000567963 PRAC2D3DTV9 90 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms