RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PRR20DP86480 221 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 PRR20BP86481 221 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 PRR20AP86496 221 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 RAB32Q13637 225 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 SPINK13Q1W4C9 94 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 Q6ZRG5 221 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 NRARPQ7Z6K4 114 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 C11orf1Q9H5F2 150 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 UQCC1Q9NVA1 299 aa14.84□□□□□ -0.03
CLN3-219ENST00000565778 SNRPCP09234 159 aaKnown RBP14.83□□□□□ -0.04
CLN3-219ENST00000565778 S100A11P31949 105 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 HIST1H1AQ02539 215 aaPredicted RBP14.83□□□□□ -0.04
CLN3-219ENST00000565778 FAM222AQ5U5X8 452 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 C10orf113Q5VZT2 155 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 BPIFA4PQ86YQ2 179 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 ENKURQ8TC29 256 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 TMEM37Q8WXS4 190 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 DNAJC4Q9NNZ3 241 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 PLA2G2EQ9NZK7 142 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 DKK2Q9UBU2 259 aa14.83□□□□□ -0.04
CLN3-219ENST00000565778 TEX48A0A1B0GUV7 120 aa14.82□□□□□ -0.04
CLN3-219ENST00000565778 MRPS12O15235 138 aaKnown RBP14.82□□□□□ -0.04
CLN3-219ENST00000565778 SULT1A1P50225 295 aa14.82□□□□□ -0.04
CLN3-219ENST00000565778 IL15RAQ13261 267 aa14.82□□□□□ -0.04
CLN3-219ENST00000565778 OR8A1Q8NGG7 326 aa14.82□□□□□ -0.04
CLN3-219ENST00000565778 NIPSNAP3BQ9BS92 247 aa14.82□□□□□ -0.04
CLN3-219ENST00000565778 GPN1Q9HCN4 374 aaPredicted RBP14.82□□□□□ -0.04
CLN3-219ENST00000565778 LYRM2Q9NU23 88 aaPredicted RBP14.82□□□□□ -0.04
CLN3-219ENST00000565778 WDR83OSQ9Y284 106 aa14.82□□□□□ -0.04
CLN3-219ENST00000565778 A6NHS1 94 aa14.81□□□□□ -0.04
CLN3-219ENST00000565778 UPK1BO75841 260 aa14.81□□□□□ -0.04
CLN3-219ENST00000565778 INSP01308 110 aa14.81□□□□□ -0.04
CLN3-219ENST00000565778 PRB4P10163 310 aaPredicted RBP14.81□□□□□ -0.04
CLN3-219ENST00000565778 MIC13Q5XKP0 118 aa14.81□□□□□ -0.04
CLN3-219ENST00000565778 TMEM252Q8N6L7 170 aa14.81□□□□□ -0.04
CLN3-219ENST00000565778 RPUSD4Q96CM3 377 aaKnown RBP14.81□□□□□ -0.04
CLN3-219ENST00000565778 NDUFAF3Q9BU61 184 aa14.81□□□□□ -0.04
CLN3-219ENST00000565778 YTHDF2Q9Y5A9 579 aaKnown RBP14.81□□□□□ -0.04
CLN3-219ENST00000565778 ZNF705GA8MUZ8 300 aaPredicted RBP14.8□□□□□ -0.04
CLN3-219ENST00000565778 CRXO43186 299 aaPredicted RBP14.8□□□□□ -0.04
CLN3-219ENST00000565778 HBG1P69891 147 aa14.8□□□□□ -0.04
CLN3-219ENST00000565778 HBG2P69892 147 aa14.8□□□□□ -0.04
CLN3-219ENST00000565778 LCN15Q6UWW0 184 aa14.8□□□□□ -0.04
CLN3-219ENST00000565778 STX12Q86Y82 276 aa14.8□□□□□ -0.04
CLN3-219ENST00000565778 OR1L4Q8NGR5 311 aa14.8□□□□□ -0.04
CLN3-219ENST00000565778 TRAV12-2A0A075B6T6 113 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 IGSF23A1L1A6 192 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 BOLA2-SMG1P6H3BVE0 249 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 PRM2P04554 102 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 CXCL2P19875 107 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 B2MP61769 119 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 BAXQ07812 192 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 OPCMLQ14982 345 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 ATP6V1FQ16864 119 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 MORN5Q5VZ52 161 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 BAP18Q8IXM2 172 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 SLC50A1Q9BRV3 221 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 ZNF331Q9NQX6 463 aaPredicted RBP14.79□□□□□ -0.04
CLN3-219ENST00000565778 KMT2AQ03164 3969 aa14.79□□□□□ -0.04
CLN3-219ENST00000565778 UBE2L5PA0A1B0GUS4 154 aa14.78□□□□□ -0.04
CLN3-219ENST00000565778 H3BTX0 84 aa14.78□□□□□ -0.04
CLN3-219ENST00000565778 SIX6O95475 246 aa14.78□□□□□ -0.04
CLN3-219ENST00000565778 RLN2P04090 185 aa14.78□□□□□ -0.04
CLN3-219ENST00000565778 HTN3P15516 51 aa14.78□□□□□ -0.04
CLN3-219ENST00000565778 VWC2Q2TAL6 325 aa14.78□□□□□ -0.04
CLN3-219ENST00000565778 TRAV5A0A0B4J249 113 aa14.77□□□□□ -0.05
CLN3-219ENST00000565778 RPL29P47914 159 aaKnown RBP14.77□□□□□ -0.05
CLN3-219ENST00000565778 DAD1P61803 113 aa14.77□□□□□ -0.05
CLN3-219ENST00000565778 LINC01587Q99440 93 aa14.77□□□□□ -0.05
CLN3-219ENST00000565778 PFDN5Q99471 154 aa14.77□□□□□ -0.05
CLN3-219ENST00000565778 PTTG2Q9NZH5 202 aa14.77□□□□□ -0.05
CLN3-219ENST00000565778 FGF7P21781 194 aa14.76□□□□□ -0.05
CLN3-219ENST00000565778 IFITM3Q01628 133 aa14.76□□□□□ -0.05
CLN3-219ENST00000565778 OXA1LQ15070 435 aa14.76□□□□□ -0.05
CLN3-219ENST00000565778 SLC39A9Q9NUM3 307 aa14.76□□□□□ -0.05
CLN3-219ENST00000565778 INMT-MINDY4F8WBC2 141 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 H3BQ15 152 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 P0DMU3 169 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 FAM231AP0DMU4 169 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 FAM231CP0DMU5 169 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 HTN1P15515 57 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 NHLH2Q02577 135 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 OR10J6PQ8NGY7 276 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 PXMP4Q9Y6I8 212 aa14.75□□□□□ -0.05
CLN3-219ENST00000565778 BIRC6Q9NR09 4857 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 SLC17A3O00476 420 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 PRAF2O60831 178 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 IGLC2P0DOY2 106 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 AZU1P20160 251 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 GUK1Q16774 197 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 TMEM256Q8N2U0 113 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 CHAC2Q8WUX2 184 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 SAT2Q96F10 170 aaPredicted RBP14.74□□□□□ -0.05
CLN3-219ENST00000565778 FAM210BQ96KR6 192 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 SLC25A31Q9H0C2 315 aa14.74□□□□□ -0.05
CLN3-219ENST00000565778 CDKN1BP46527 198 aa14.73□□□□□ -0.05
CLN3-219ENST00000565778 CYCSP99999 105 aaKnown RBP14.73□□□□□ -0.05
CLN3-219ENST00000565778 LRRC37A5PQ49AS3 106 aa14.73□□□□□ -0.05
CLN3-219ENST00000565778 POM121L12Q8N7R1 296 aa14.73□□□□□ -0.05
CLN3-219ENST00000565778 NMES1Q9C002 83 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms