RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	TMEM182	Q6ZP80	229 aa	Predicted RBP	10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	LINC00336	Q6ZUF6	198 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	OR1L4	Q8NGR5	311 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	C2orf50	Q96LR7	162 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	PFDN5	Q99471	154 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	SEC22C	Q9BRL7	303 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	GPN1	Q9HCN4	374 aa	Predicted RBP	10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	LSM5	Q9Y4Y9	91 aa	Known RBP	10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	YTHDF2	Q9Y5A9	579 aa	Known RBP	10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	PXMP4	Q9Y6I8	212 aa		10.09	□□□□□ -0.79
TPM1-223	ENST00000560445	CXCL3	P19876	107 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	TSPO	P30536	169 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	DEFB1	P60022	68 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	HIST1H1A	Q02539	215 aa	Predicted RBP	10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	ASAH1	Q13510	395 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	PSG3	Q16557	428 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	GUK1	Q16774	197 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	C10orf113	Q5VZT2	155 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	AMTN	Q6UX39	209 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	ZNF767P	Q75MW2	155 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	LINC00305	Q7Z4B0	112 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	UBE2DNL	Q8IWF7	75 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	POM121L12	Q8N7R1	296 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	OR11H7	Q8NGC8	314 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	OR8A1	Q8NGG7	326 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	ENKUR	Q8TC29	256 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	C20orf173	Q96LM9	149 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	UHRF2	Q96PU4	802 aa		10.08	□□□□□ -0.8
TPM1-223	ENST00000560445	CCNK	O75909	580 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	S100A11	P31949	105 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	CAMLG	P49069	296 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	SPINK13	Q1W4C9	94 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	C1orf158	Q8N1D5	194 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	RNF182	Q8N6D2	247 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	C15orf53	Q8NAA6	179 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	OR10J6P	Q8NGY7	276 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	C20orf144	Q9BQM9	153 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	UQCC1	Q9NVA1	299 aa		10.07	□□□□□ -0.8
TPM1-223	ENST00000560445	TRAV8-2	A0A0B4J237	113 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	MPDU1	O75352	247 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	S100A10	P60903	97 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	PRR20E	P86478	221 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	PRR20C	P86479	221 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	PRR20D	P86480	221 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	PRR20B	P86481	221 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	PRR20A	P86496	221 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	ATP6V1F	Q16864	119 aa		10.06	□□□□□ -0.8
TPM1-223	ENST00000560445	RPUSD4	Q96CM3	377 aa	Known RBP	10.06	□□□□□ -0.8
TPM1-223	ENST00000560445		M0R2Z0	102 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	UPK1B	O75841	260 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	CDKN1B	P46527	198 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	SULT1A1	P50225	295 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	FAM3B	P58499	235 aa	Predicted RBP	10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	TAS2R60	P59551	318 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	RNF212	Q495C1	297 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	SOHLH1	Q5JUK2	328 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	ZNF493	Q6ZR52	646 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	DNAJC4	Q9NNZ3	241 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	ZNF331	Q9NQX6	463 aa	Predicted RBP	10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	KCNIP2	Q9NS61	270 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	LYRM2	Q9NU23	88 aa	Predicted RBP	10.05	□□□□□ -0.8
TPM1-223	ENST00000560445	PTTG2	Q9NZH5	202 aa		10.05	□□□□□ -0.8
TPM1-223	ENST00000560445		A6NHS1	94 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	CST7	O76096	145 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	RLN2	P04090	185 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	HTN3	P15516	51 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	NRARP	Q7Z6K4	114 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	C16orf74	Q96GX8	76 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	C17orf77	Q96MU5	243 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	LINC01587	Q99440	93 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	MGST2	Q99735	147 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	WDR83OS	Q9Y284	106 aa		10.04	□□□□□ -0.8
TPM1-223	ENST00000560445	FAM24A	A6NFZ4	105 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445		H7BYZ3	331 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	PRAF2	O60831	178 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	ZNF253	O75346	499 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	RPL29	P47914	159 aa	Known RBP	10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	DEFA1	P59665	94 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	DEFA3	P59666	94 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	CYCS	P99999	105 aa	Known RBP	10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	BAX	Q07812	192 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	ARL16	Q0P5N6	197 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	VWC2	Q2TAL6	325 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	CCDC28A	Q8IWP9	274 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	BAP18	Q8IXM2	172 aa		10.03	□□□□□ -0.8
TPM1-223	ENST00000560445	CRX	O43186	299 aa	Predicted RBP	10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	RAB32	Q13637	225 aa		10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	IGFL4	Q6B9Z1	124 aa		10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	PATE2	Q6UY27	113 aa		10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	CHAC2	Q8WUX2	184 aa		10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	ODF3	Q96PU9	254 aa		10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	SLC25A31	Q9H0C2	315 aa		10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	10.02	□□□□□ -0.81
TPM1-223	ENST00000560445	UBE2L5P	A0A1B0GUS4	154 aa		10.01	□□□□□ -0.81
TPM1-223	ENST00000560445	ZNF705G	A8MUZ8	300 aa	Predicted RBP	10.01	□□□□□ -0.81
TPM1-223	ENST00000560445	MRPS12	O15235	138 aa	Known RBP	10.01	□□□□□ -0.81
TPM1-223	ENST00000560445	ATP5G1	P05496	136 aa		10.01	□□□□□ -0.81
TPM1-223	ENST00000560445	LEP	P41159	167 aa		10.01	□□□□□ -0.81
TPM1-223	ENST00000560445	ATP5G3	P48201	142 aa		10.01	□□□□□ -0.81
TPM1-223	ENST00000560445	OPCML	Q14982	345 aa		10.01	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 212.1 ms