RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 BPIFA4PQ86YQ2 179 aa9.95□□□□□ -0.82
SHMT2-219ENST00000555563 ZNF738Q8NE65 137 aa9.95□□□□□ -0.82
SHMT2-219ENST00000555563 OR1L4Q8NGR5 311 aa9.95□□□□□ -0.82
SHMT2-219ENST00000555563 PFDN5Q99471 154 aa9.95□□□□□ -0.82
SHMT2-219ENST00000555563 SLC35B3Q9H1N7 401 aa9.95□□□□□ -0.82
SHMT2-219ENST00000555563 HSPB11Q9Y547 144 aa9.95□□□□□ -0.82
SHMT2-219ENST00000555563 TRAV5A0A0B4J249 113 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 A8MTW9 85 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 IGLC2P0DOY2 106 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 MIFP14174 115 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 CXCL2P19875 107 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 PSG9Q00887 426 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 FCN2Q15485 313 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 LCN15Q6UWW0 184 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 OR11H7Q8NGC8 314 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 ATP5SQ99766 215 aa9.94□□□□□ -0.82
SHMT2-219ENST00000555563 WDR61Q9GZS3 305 aaKnown RBP9.94□□□□□ -0.82
SHMT2-219ENST00000555563 ZNF331Q9NQX6 463 aaPredicted RBP9.94□□□□□ -0.82
SHMT2-219ENST00000555563 EPPK1P58107 5090 aaKnown RBP9.94□□□□□ -0.82
SHMT2-219ENST00000555563 DYNC2H1Q8NCM8 4307 aaKnown RBP9.93□□□□□ -0.82
SHMT2-219ENST00000555563 TENM2Q9NT68 2774 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 LCE6AA0A183 80 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 H3BTX0 84 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 SLC17A3O00476 420 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 ZNF705DP0CH99 300 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-219ENST00000555563 ZNF705BP0CI00 300 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-219ENST00000555563 RBMY1A1P0DJD3 496 aaKnown RBP9.93□□□□□ -0.82
SHMT2-219ENST00000555563 RBMY1CP0DJD4 496 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 PRB4P10163 310 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-219ENST00000555563 CNN1P51911 297 aaKnown RBP9.93□□□□□ -0.82
SHMT2-219ENST00000555563 RBMY1FQ15415 496 aaKnown RBP9.93□□□□□ -0.82
SHMT2-219ENST00000555563 GCSAMLQ5JQS6 135 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 AMTNQ6UX39 209 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 LRRC20Q8TCA0 184 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 SLC50A1Q9BRV3 221 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 MFFQ9GZY8 342 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 MED28Q9H204 178 aa9.93□□□□□ -0.82
SHMT2-219ENST00000555563 BIRC6Q9NR09 4857 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 STARD9Q9P2P6 4700 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 NUPR2A6NF83 97 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 H3BQ15 152 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 RPL12P30050 165 aaKnown RBP9.92□□□□□ -0.82
SHMT2-219ENST00000555563 NANOS2P60321 138 aaKnown RBP9.92□□□□□ -0.82
SHMT2-219ENST00000555563 PSG3Q16557 428 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 RGS21Q2M5E4 152 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 ZNF705AQ6ZN79 300 aaPredicted RBP9.92□□□□□ -0.82
SHMT2-219ENST00000555563 C11orf45Q8TAV5 145 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 SMIM3Q9BZL3 60 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 HRH4Q9H3N8 390 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 KCNIP2Q9NS61 270 aa9.92□□□□□ -0.82
SHMT2-219ENST00000555563 ZNF705FA8MVS1 300 aaPredicted RBP9.91□□□□□ -0.82
SHMT2-219ENST00000555563 DUSP14O95147 198 aaKnown RBP9.91□□□□□ -0.82
SHMT2-219ENST00000555563 HIST1H1AQ02539 215 aaPredicted RBP9.91□□□□□ -0.82
SHMT2-219ENST00000555563 OR8A1Q8NGG7 326 aa9.91□□□□□ -0.82
SHMT2-219ENST00000555563 CSMD3Q7Z407 3707 aa9.9□□□□□ -0.82
SHMT2-219ENST00000555563 IGHV3OR16-12A0A075B7B8 117 aa9.9□□□□□ -0.82
SHMT2-219ENST00000555563 SPINK13Q1W4C9 94 aa9.9□□□□□ -0.82
SHMT2-219ENST00000555563 CEMP1Q6PRD7 247 aaPredicted RBP9.9□□□□□ -0.82
SHMT2-219ENST00000555563 PHLDA1Q8WV24 401 aaPredicted RBP9.9□□□□□ -0.82
SHMT2-219ENST00000555563 RPUSD4Q96CM3 377 aaKnown RBP9.9□□□□□ -0.82
SHMT2-219ENST00000555563 SAT2Q96F10 170 aaPredicted RBP9.9□□□□□ -0.82
SHMT2-219ENST00000555563 ZNF586Q9NXT0 402 aa9.9□□□□□ -0.82
SHMT2-219ENST00000555563 TMEM14CQ9P0S9 112 aa9.9□□□□□ -0.82
SHMT2-219ENST00000555563 C17orf112F2Z3M2 114 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 BOLA2-SMG1P6H3BVE0 249 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 M0R2Z0 102 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 PYYP10082 97 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 OXA1LQ15070 435 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 GUK1Q16774 197 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 MIR17HGQ75NE6 70 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 C1orf158Q8N1D5 194 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 NEU1Q99519 415 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 SLC25A2Q9BXI2 301 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 WFDC1Q9HC57 220 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 GOLT1BQ9Y3E0 138 aa9.89□□□□□ -0.83
SHMT2-219ENST00000555563 ZNF253O75346 499 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 JTBO76095 146 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 IFNA5P01569 189 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 AMBPP02760 352 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 GIPP09681 153 aaPredicted RBP9.88□□□□□ -0.83
SHMT2-219ENST00000555563 BAP18Q8IXM2 172 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 FAM167A-AS1Q96KT0 104 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 IGF2BP2-AS1Q96M15 143 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 CELA1Q9UNI1 258 aa9.88□□□□□ -0.83
SHMT2-219ENST00000555563 TRBV19A0A075B6N1 114 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 SMIM9A6NGZ8 99 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 PRAC2D3DTV9 90 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 CRXO43186 299 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-219ENST00000555563 INSP01308 110 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 HIST1H1EP10412 219 aaKnown RBP9.87□□□□□ -0.83
SHMT2-219ENST00000555563 RHOBP62745 196 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 Q5BKY6 102 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 FFAR4Q5NUL3 377 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 SCGB1C1Q8TD33 95 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 ASB13Q8WXK3 278 aa9.87□□□□□ -0.83
SHMT2-219ENST00000555563 MRPL32Q9BYC8 188 aaKnown RBP9.87□□□□□ -0.83
SHMT2-219ENST00000555563 PARD6GQ9BYG4 376 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-219ENST00000555563 KLK5Q9Y337 293 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-219ENST00000555563 TRAV12-2A0A075B6T6 113 aa9.86□□□□□ -0.83
SHMT2-219ENST00000555563 NDUFB4O95168 129 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms