RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 RPL29P47914 159 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 CNN1P51911 297 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 BPIFA4PQ86YQ2 179 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 IGF2BP2-AS1Q96M15 143 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 SLC50A1Q9BRV3 221 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 GOLT1BQ9Y3E0 138 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 RFNGQ9Y644 331 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 INMT-MINDY4F8WBC2 141 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 LY6G6CO95867 125 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 DEFA1P59665 94 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 DEFA3P59666 94 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 CYCSP99999 105 aaKnown RBP11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 OPCMLQ14982 345 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 Q6ZRG5 221 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 Q6ZTC4 211 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 C1orf158Q8N1D5 194 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 RNF182Q8N6D2 247 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 OR11H7Q8NGC8 314 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 OR1L4Q8NGR5 311 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 PFDN5Q99471 154 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 DNAJC4Q9NNZ3 241 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 ZNF331Q9NQX6 463 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 CELA1Q9UNI1 258 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 HYDINQ4G0P3 5121 aa11.52□□□□□ -0.57
CCDC88C-209ENST00000554872 E5RGE8 158 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 IGLC2P0DOY2 106 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 B2MP61769 119 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 PSG3Q16557 428 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 C12orf74Q32Q52 190 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 C10orf113Q5VZT2 155 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 ZNF738Q8NE65 137 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 RNF126Q9BV68 326 aa11.51□□□□□ -0.57
CCDC88C-209ENST00000554872 UBE2L5PA0A1B0GUS4 154 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 ZNF253O75346 499 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 FXYD7P58549 80 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 BAXQ07812 192 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 FGL1Q08830 312 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 GUK1Q16774 197 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 OR8A1Q8NGG7 326 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 SLC39A9Q9NUM3 307 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 PXMP4Q9Y6I8 212 aa11.5□□□□□ -0.57
CCDC88C-209ENST00000554872 BOLA2-SMG1P6H3BVE0 249 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 CRXO43186 299 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 HBE1P02100 147 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 RLN2P04090 185 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 SPART-AS1P0CW21 52 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 OXA1LQ15070 435 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 MORN5Q5VZ52 161 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 MIC13Q5XKP0 118 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 IGFL4Q6B9Z1 124 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 SLC25A31Q9H0C2 315 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 APLNQ9ULZ1 77 aa11.49□□□□□ -0.57
CCDC88C-209ENST00000554872 INSP01308 110 aa11.48□□□□□ -0.57
CCDC88C-209ENST00000554872 TSPOP30536 169 aa11.48□□□□□ -0.57
CCDC88C-209ENST00000554872 LRRC20Q8TCA0 184 aa11.48□□□□□ -0.57
CCDC88C-209ENST00000554872 SAT2Q96F10 170 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-209ENST00000554872 DKK2Q9UBU2 259 aa11.48□□□□□ -0.57
CCDC88C-209ENST00000554872 KMT2AQ03164 3969 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 H0YIZ8 118 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 SIX6O95475 246 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 FGF7P21781 194 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 H2BFSP57053 126 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 RRN3P1Q2M238 152 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 TMEM256Q8N2U0 113 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 RPUSD4Q96CM3 377 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 FAM210BQ96KR6 192 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 NPCDR1Q9BY65 106 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 OR5AC2Q9NZP5 309 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 TMEM14CQ9P0S9 112 aa11.47□□□□□ -0.57
CCDC88C-209ENST00000554872 IGHV3OR16-12A0A075B7B8 117 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 DEFB131BA0A096LNP1 70 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 LOC102723971A0A1B0GUV8 181 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 IGLL5B9A064 214 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 H3BQ15 152 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 M0R2Z0 102 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 PET100P0DJ07 73 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 HIST1H1AQ02539 215 aaPredicted RBP11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 SPINK13Q1W4C9 94 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 OR5C1Q8NGR4 320 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 PPP1R1CQ8WVI7 109 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 MRPL53Q96EL3 112 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 KCNIP2Q9NS61 270 aa11.46□□□□□ -0.57
CCDC88C-209ENST00000554872 IGHV4-4A0A075B6R2 117 aa11.45□□□□□ -0.58
CCDC88C-209ENST00000554872 SLC17A3O00476 420 aa11.45□□□□□ -0.58
CCDC88C-209ENST00000554872 NHLH2Q02577 135 aa11.45□□□□□ -0.58
CCDC88C-209ENST00000554872 PDE6HQ13956 83 aa11.45□□□□□ -0.58
CCDC88C-209ENST00000554872 ODF3Q96PU9 254 aa11.45□□□□□ -0.58
CCDC88C-209ENST00000554872 C20orf144Q9BQM9 153 aa11.45□□□□□ -0.58
CCDC88C-209ENST00000554872 NIPSNAP3BQ9BS92 247 aa11.45□□□□□ -0.58
CCDC88C-209ENST00000554872 CDKN1BP46527 198 aa11.44□□□□□ -0.58
CCDC88C-209ENST00000554872 FAM222AQ5U5X8 452 aa11.44□□□□□ -0.58
CCDC88C-209ENST00000554872 TMEM208Q9BTX3 173 aa11.44□□□□□ -0.58
CCDC88C-209ENST00000554872 YTHDF2Q9Y5A9 579 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-209ENST00000554872 TRBV19A0A075B6N1 114 aa11.43□□□□□ -0.58
CCDC88C-209ENST00000554872 SSNA1O43805 119 aa11.43□□□□□ -0.58
CCDC88C-209ENST00000554872 MPC2O95563 127 aa11.43□□□□□ -0.58
CCDC88C-209ENST00000554872 LRRC37A5PQ49AS3 106 aa11.43□□□□□ -0.58
CCDC88C-209ENST00000554872 BAP18Q8IXM2 172 aa11.43□□□□□ -0.58
CCDC88C-209ENST00000554872 WDR61Q9GZS3 305 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-209ENST00000554872 ZNF586Q9NXT0 402 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms