RNA–Protein interactions for RNA: ENST00000541363.5

HMGA2-210, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 8,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-210ENST00000541363 WISP3O95389 354 aaPredicted RBP12.57□□□□□ -0.4
HMGA2-210ENST00000541363 PRSS29PA6NIE9 313 aa12.57□□□□□ -0.4
HMGA2-210ENST00000541363 VWC2Q2TAL6 325 aa12.57□□□□□ -0.4
HMGA2-210ENST00000541363 OR11H6Q8NGC7 330 aa12.57□□□□□ -0.4
HMGA2-210ENST00000541363 WBP1Q96G27 269 aa12.57□□□□□ -0.4
HMGA2-210ENST00000541363 CARD19Q96LW7 228 aa12.57□□□□□ -0.4
HMGA2-210ENST00000541363 CRYBA4P53673 196 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 TMEM200BQ69YZ2 307 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 PTPRDP23468 1912 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 TMEM256Q8N2U0 113 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 GREB1Q4ZG55 1949 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 LYNX1G3V0Z9 82 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 TIAF1O95411 115 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 LYNX1P0DP58 116 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 MP68P56378 58 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 SYNJ2BPP57105 145 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 NXPH4O95158 308 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 PRR31Q5SQ13 230 aa12.56□□□□□ -0.4
HMGA2-210ENST00000541363 TRAV1-1A0A0B4J248 108 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 FUSP35637 526 aaKnown RBP eCLIP12.55□□□□□ -0.45e-7■■■■□ 23.7
HMGA2-210ENST00000541363 IGLV3-21P80748 117 aaPredicted RBP12.55□□□□□ -0.4
HMGA2-210ENST00000541363 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.55□□□□□ -0.4
HMGA2-210ENST00000541363 A0A1W2PR77 199 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 SLC25A16P16260 332 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 C14orf132Q9NPU4 83 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 IGKV1D-43A0A0B4J1Z2 117 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 ID3Q02535 119 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 H3BUX3 64 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 IGHV1-8P0DP01 117 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 PCNX2A6NKB5 2137 aa12.55□□□□□ -0.4
HMGA2-210ENST00000541363 MRPL14Q6P1L8 145 aaKnown RBP12.55□□□□□ -0.4
HMGA2-210ENST00000541363 E9PQ18 207 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 DKK1O94907 266 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 DAZ1Q9NQZ3 744 aaKnown RBP12.54□□□□□ -0.4
HMGA2-210ENST00000541363 PRO1854Q9UHT4 67 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 IGHV1-18A0A0C4DH31 117 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 TMEM75Q8N9X5 138 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.54□□□□□ -0.4
HMGA2-210ENST00000541363 B4DSR2 109 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 M0R1W7 72 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 FGF16O43320 207 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 ZNF329Q86UD4 541 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 CADP27708 2225 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 PRB1P04280 392 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 GLRX5Q86SX6 157 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 LRP5O75197 1615 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 TRPM7Q96QT4 1865 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 NDUFB1O75438 58 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 RNASE2P10153 161 aaKnown RBP12.54□□□□□ -0.4
HMGA2-210ENST00000541363 CEND1Q8N111 149 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 SHANK3Q9BYB0 1731 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 C20orf204Q6ZNR8 217 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 RHPN1-AS1Q9BWJ2 59 aa12.54□□□□□ -0.4
HMGA2-210ENST00000541363 IGHV3-16A0A0C4DH30 117 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 XIRP1Q702N8 1843 aaKnown RBP12.53□□□□□ -0.4
HMGA2-210ENST00000541363 F6UB75 175 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 TFF1P04155 84 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 ORMDL1Q9P0S3 153 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 DKK4Q9UBT3 224 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 C4orf51C9J302 202 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 SPTBN1Q01082 2364 aaKnown RBP12.53□□□□□ -0.4
HMGA2-210ENST00000541363 IGHV1-46P01743 117 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 CSRP2Q16527 193 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 C5orf64Q2M2E5 130 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 MCRIP2Q9BUT9 160 aaKnown RBP12.53□□□□□ -0.4
HMGA2-210ENST00000541363 CEP250Q9BV73 2442 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 ARMS2P0C7Q2 107 aa12.53□□□□□ -0.4
HMGA2-210ENST00000541363 AHDC1Q5TGY3 1603 aaPredicted RBP12.52□□□□□ -0.4
HMGA2-210ENST00000541363 COLCA2A8K830 154 aa12.52□□□□□ -0.4
HMGA2-210ENST00000541363 PSPNO60542 156 aa12.52□□□□□ -0.4
HMGA2-210ENST00000541363 EFNA4P52798 201 aa12.52□□□□□ -0.4
HMGA2-210ENST00000541363 CRYGCP07315 174 aa12.52□□□□□ -0.4
HMGA2-210ENST00000541363 HLA-DMBP28068 263 aa12.52□□□□□ -0.4
HMGA2-210ENST00000541363 ZNF362Q5T0B9 420 aaPredicted RBP12.52□□□□□ -0.4
HMGA2-210ENST00000541363 PDE6HQ13956 83 aa12.52□□□□□ -0.41
HMGA2-210ENST00000541363 ZNF672Q499Z4 452 aaPredicted RBP12.52□□□□□ -0.41
HMGA2-210ENST00000541363 ZCCHC24Q8N2G6 241 aaKnown RBP12.52□□□□□ -0.41
HMGA2-210ENST00000541363 C15orf53Q8NAA6 179 aa12.52□□□□□ -0.41
HMGA2-210ENST00000541363 PRB2P02812 416 aaPredicted RBP12.52□□□□□ -0.41
HMGA2-210ENST00000541363 HERVK_113P63121 156 aa12.52□□□□□ -0.41
HMGA2-210ENST00000541363 FAM104BQ5XKR9 115 aa12.52□□□□□ -0.41
HMGA2-210ENST00000541363 ALPK2Q86TB3 2170 aa12.52□□□□□ -0.41
HMGA2-210ENST00000541363 TRPM3Q9HCF6 1732 aaPredicted RBP12.52□□□□□ -0.41
HMGA2-210ENST00000541363 GAGE12HA6NDE8 117 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 ZMAT4Q9H898 229 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 E9PLN8 166 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 DEFB131AP59861 70 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 A8MWP6 167 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 HLA-DRB4P13762 266 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 SRSF8Q9BRL6 282 aaKnown RBP12.51□□□□□ -0.41
HMGA2-210ENST00000541363 HLA-DRB4X5D2U9 266 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 IGHV1-24A0A0C4DH33 117 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 BUB1B-PAK6H3BSN5 160 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 Q8N8P6 123 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 BVES-AS1Q5T3Y7 98 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 SIPA1L1O43166 1804 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 LINC01356Q8N9X3 169 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 LYZL4Q96KX0 146 aa12.51□□□□□ -0.41
HMGA2-210ENST00000541363 COLQQ9Y215 455 aaPredicted RBP12.5□□□□□ -0.41
HMGA2-210ENST00000541363 IGKV1-5P01602 117 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms