RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 ACY3Q96HD9 319 aa4.69□□□□□ -1.66
CD44-221ENST00000526000 ATP5SQ99766 215 aa4.69□□□□□ -1.66
CD44-221ENST00000526000 SLC45A2Q9UMX9 530 aa4.69□□□□□ -1.66
CD44-221ENST00000526000 U3KQE9 123 aa4.69□□□□□ -1.66
CD44-221ENST00000526000 SMCO3A2RU48 225 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 ZFP92A6NM28 416 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 C17orf112F2Z3M2 114 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 F6UB75 175 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 G3V3Q6 166 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 CST7O76096 145 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 TOMM40O96008 361 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 IL4P05112 153 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 PRB4P10163 310 aaPredicted RBP4.68□□□□□ -1.66
CD44-221ENST00000526000 EIF2B2P49770 351 aaKnown RBP4.68□□□□□ -1.66
CD44-221ENST00000526000 NUTF2P61970 127 aaKnown RBP4.68□□□□□ -1.66
CD44-221ENST00000526000 EIF5AP63241 154 aaKnown RBP4.68□□□□□ -1.66
CD44-221ENST00000526000 USF2Q15853 346 aaPredicted RBP4.68□□□□□ -1.66
CD44-221ENST00000526000 FAM222AQ5U5X8 452 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 Q6ZR54 194 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 BPIFCQ8NFQ6 507 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 OR51G1Q8NGK1 321 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 NIPSNAP3BQ9BS92 247 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 PBDC1Q9BVG4 233 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 SLC35B3Q9H1N7 401 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 WDR83OSQ9Y284 106 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 DNAH17Q9UFH2 4485 aa4.68□□□□□ -1.66
CD44-221ENST00000526000 hCG_2014768A0A024R1R8 64 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 BORCS7-ASMTA0A0B4J1R7 106 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 RNF222A6NCQ9 220 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 C16orf90A8MZG2 172 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 RD3LP0DJH9 198 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 RPL29P47914 159 aaKnown RBP4.67□□□□□ -1.66
CD44-221ENST00000526000 CAMLGP49069 296 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 PLP1P60201 277 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 SNRPD3P62318 126 aaKnown RBP4.67□□□□□ -1.66
CD44-221ENST00000526000 NHLH2Q02577 135 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 ARL16Q0P5N6 197 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 Q5BKY6 102 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 TMEM88Q6PEY1 159 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 CYP2G1PQ6ZSU1 146 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 KCNRGQ8N5I3 272 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 MAPKAPK5-AS1Q8N8E1 139 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 ZNF709Q8N972 641 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 SCGB1C1Q8TD33 95 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 PPP1R14BQ96C90 147 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 GNPNAT1Q96EK6 184 aaPredicted RBP4.67□□□□□ -1.66
CD44-221ENST00000526000 C1QTNF4Q9BXJ3 329 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 WDR61Q9GZS3 305 aaKnown RBP4.67□□□□□ -1.66
CD44-221ENST00000526000 DKK2Q9UBU2 259 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 YTHDF2Q9Y5A9 579 aaKnown RBP4.67□□□□□ -1.66
CD44-221ENST00000526000 TIMM9Q9Y5J7 89 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 RYR1P21817 5038 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 PCLOQ9Y6V0 5065 aa4.67□□□□□ -1.66
CD44-221ENST00000526000 IGKV1D-37A0A075B6S9 117 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 IGKV1OR2-108A0A075B7D4 117 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 UBE2L5PA0A1B0GUS4 154 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 A0A1B0GVG6 124 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 KANTRA0A1W2PQU2 76 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 ZNF705GA8MUZ8 300 aaPredicted RBP4.66□□□□□ -1.66
CD44-221ENST00000526000 AGPAT2O15120 278 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 ARPC5O15511 151 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 BUB3O43684 328 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 PFDN1O60925 122 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 NUDT3O95989 172 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 HBE1P02100 147 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 MBP02144 154 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 ZNF705DP0CH99 300 aaPredicted RBP4.66□□□□□ -1.66
CD44-221ENST00000526000 ZNF705BP0CI00 300 aaPredicted RBP4.66□□□□□ -1.66
CD44-221ENST00000526000 PSG1P11464 419 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 FGF7P21781 194 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 DAD1P61803 113 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 SERF2P84101 59 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 CLINT1Q14677 625 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 OPCMLQ14982 345 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 ZFP69Q49AA0 526 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 SOHLH1Q5JUK2 328 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 IGFL4Q6B9Z1 124 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 SIGLEC15Q6ZMC9 328 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 ZNF705AQ6ZN79 300 aaPredicted RBP4.66□□□□□ -1.66
CD44-221ENST00000526000 Q6ZRG5 221 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 C1orf158Q8N1D5 194 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 OR1L4Q8NGR5 311 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 RNF125Q96EQ8 232 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 PFDN5Q99471 154 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 ARPC5LQ9BPX5 153 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 ATG101Q9BSB4 218 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 PSMG3Q9BT73 122 aaPredicted RBP4.66□□□□□ -1.66
CD44-221ENST00000526000 NPCDR1Q9BY65 106 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 NRN1Q9NPD7 142 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 RFNGQ9Y644 331 aa4.66□□□□□ -1.66
CD44-221ENST00000526000 DYNC1H1Q14204 4646 aaKnown RBP4.66□□□□□ -1.66
CD44-221ENST00000526000 DNAH6Q9C0G6 4158 aa4.65□□□□□ -1.66
CD44-221ENST00000526000 LOC102723971A0A1B0GUV8 181 aa4.65□□□□□ -1.67
CD44-221ENST00000526000 ZNF705FA8MVS1 300 aaPredicted RBP4.65□□□□□ -1.67
CD44-221ENST00000526000 F5H768 121 aa4.65□□□□□ -1.67
CD44-221ENST00000526000 BCL2L11O43521 198 aa4.65□□□□□ -1.67
CD44-221ENST00000526000 HYPMO75409 117 aa4.65□□□□□ -1.67
CD44-221ENST00000526000 LINC00869P0C866 280 aa4.65□□□□□ -1.67
CD44-221ENST00000526000 DEFB130BP0DP73 79 aa4.65□□□□□ -1.67
CD44-221ENST00000526000 DEFB130AP0DP74 79 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms