RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TAS2R60P59551 318 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 GUCA2BQ16661 112 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 TCTEX1D4Q5JR98 221 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 UNQ9165/PRO28630Q6UXU0 137 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 C1QL4Q86Z23 238 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 SDF2L1Q9HCN8 221 aa12.25□□□□□ -0.45
NUP54-214ENST00000514307 M0QZ24 198 aa12.24□□□□□ -0.45
NUP54-214ENST00000514307 SNRPCP09234 159 aaKnown RBP12.24□□□□□ -0.45
NUP54-214ENST00000514307 KLF5Q13887 457 aaPredicted RBP12.24□□□□□ -0.45
NUP54-214ENST00000514307 TM4SF20Q53R12 229 aa12.24□□□□□ -0.45
NUP54-214ENST00000514307 SIGLEC15Q6ZMC9 328 aa12.24□□□□□ -0.45
NUP54-214ENST00000514307 SLC50A1Q9BRV3 221 aa12.24□□□□□ -0.45
NUP54-214ENST00000514307 RHPN1-AS1Q9BWJ2 59 aa12.24□□□□□ -0.45
NUP54-214ENST00000514307 MXRA5Q9NR99 2828 aa12.24□□□□□ -0.45
NUP54-214ENST00000514307 SMAD5-AS1Q9Y6J3 95 aa12.24□□□□□ -0.45
NUP54-214ENST00000514307 IGHV4OR15-8A0A075B7B6 117 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 A0A087WW49 117 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 SERTM2A0A1B0GWG4 89 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 SCO2A0A1W2PP80 73 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 APOHP02749 345 aaPredicted RBP12.23□□□□□ -0.45
NUP54-214ENST00000514307 HOXD3P31249 432 aaPredicted RBP12.23□□□□□ -0.45
NUP54-214ENST00000514307 RHEBQ15382 184 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 SAMD13Q5VXD3 122 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 KLHL30-AS1Q8NEE0 82 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 OR11H1Q8NG94 326 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 PEMTQ9UBM1 199 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 LY96Q9Y6Y9 160 aa12.23□□□□□ -0.45
NUP54-214ENST00000514307 SETD2Q9BYW2 2564 aaPredicted RBP12.23□□□□□ -0.45
NUP54-214ENST00000514307 TLN2Q9Y4G6 2542 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 IGHV3-66A0A0C4DH42 116 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 H3BTX0 84 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 PEX7O00628 323 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 CHEK1O14757 476 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 CD28P10747 220 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 AKR1C3P42330 323 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 PROK1P58294 105 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 C17orf77Q96MU5 243 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 ATG101Q9BSB4 218 aa12.22□□□□□ -0.45
NUP54-214ENST00000514307 IGHV3OR16-13A0A075B7E8 117 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 IGHV3-49A0A0A0MS15 119 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 IGHV3-74A0A0B4J1X5 117 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 C7orf77A4D0Y5 90 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 FBLL1A6NHQ2 334 aaKnown RBP12.21□□□□□ -0.45
NUP54-214ENST00000514307 A8MWP6 167 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 C9JCJ5 164 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 MT-ND4LP03901 98 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 RPL35P42766 123 aaKnown RBP12.21□□□□□ -0.45
NUP54-214ENST00000514307 GNG4P50150 75 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 SYNJ2BPP57105 145 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 UBE2G1P62253 170 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 RPL11P62913 178 aaKnown RBP12.21□□□□□ -0.45
NUP54-214ENST00000514307 FOXL1Q12952 345 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 C2CD4CQ8TF44 421 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 GLMPQ8WWB7 406 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 RPS10P5Q9NQ39 176 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 KLF12Q9Y4X4 402 aa12.21□□□□□ -0.45
NUP54-214ENST00000514307 TCRAP04437 139 aa12.2□□□□□ -0.46
NUP54-214ENST00000514307 EXOC3-AS1Q8N2X6 119 aa12.2□□□□□ -0.46
NUP54-214ENST00000514307 FMC1Q96HJ9 113 aa12.2□□□□□ -0.46
NUP54-214ENST00000514307 CITED2Q99967 270 aaPredicted RBP12.2□□□□□ -0.46
NUP54-214ENST00000514307 ZNF331Q9NQX6 463 aaPredicted RBP12.2□□□□□ -0.46
NUP54-214ENST00000514307 A0A087WWC5 75 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 CBLN1P23435 193 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 ADIRFQ15847 76 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 TMEM183BQ1AE95 376 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 AWAT1Q58HT5 328 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 C16orf92Q96LL3 132 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 CTDSP1Q9GZU7 261 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 BIN3Q9NQY0 253 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 ZFHX3Q15911 3703 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 SVEP1Q4LDE5 3571 aa12.19□□□□□ -0.46
NUP54-214ENST00000514307 SONP18583 2426 aaKnown RBP12.18□□□□□ -0.46
NUP54-214ENST00000514307 CCL24O00175 119 aa12.18□□□□□ -0.46
NUP54-214ENST00000514307 ID1P41134 155 aa12.18□□□□□ -0.46
NUP54-214ENST00000514307 RPL23P62829 140 aaKnown RBP12.18□□□□□ -0.46
NUP54-214ENST00000514307 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.18□□□□□ -0.46
NUP54-214ENST00000514307 BAGE2Q86Y30 109 aa12.18□□□□□ -0.46
NUP54-214ENST00000514307 OCC1Q8TAD7 63 aa12.18□□□□□ -0.46
NUP54-214ENST00000514307 MRPL53Q96EL3 112 aaKnown RBP12.18□□□□□ -0.46
NUP54-214ENST00000514307 SMIM12Q96EX1 92 aa12.18□□□□□ -0.46
NUP54-214ENST00000514307 SMCO4Q9NRQ5 59 aa12.18□□□□□ -0.46
NUP54-214ENST00000514307 FN1P02751 2386 aaKnown RBP12.18□□□□□ -0.46
NUP54-214ENST00000514307 TRBV6-1A0A0K0K1D8 114 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 DIRC3C9JPN6 131 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 PPP1R2P9O14990 202 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 FOLR2P14207 255 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 PAFAH1B2P68402 229 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 LCN12Q6JVE5 192 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 ATRAIDQ6UW56 229 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 C18orf65Q6ZTR6 163 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 C8orf86Q6ZUL3 223 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 TCF24Q7RTU0 167 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 C11orf44Q8N8P7 122 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 ANAPC16Q96DE5 110 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 DERL1Q9BUN8 251 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 NRN1Q9NPD7 142 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 TMEM242Q9NWH2 141 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 MLXQ9UH92 298 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 RPH3ALQ9UNE2 315 aa12.17□□□□□ -0.46
NUP54-214ENST00000514307 NSD1Q96L73 2696 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms