RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CLUHP3Q96NS8 147 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 CELA1Q9UNI1 258 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 E5RGE8 158 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 SLC17A3O00476 420 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 CXCL3P19876 107 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 S100A7P31151 101 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 CNN1P51911 297 aaKnown RBP13.06□□□□□ -0.32
COL9A3-214ENST00000490398 HBG1P69891 147 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 HBG2P69892 147 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 PSG9Q00887 426 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 GCSAMLQ5JQS6 135 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 ZNF705AQ6ZN79 300 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-214ENST00000490398 OR5C1Q8NGR4 320 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 THAP6Q8TBB0 222 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 C1QTNF4Q9BXJ3 329 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 DNAJC4Q9NNZ3 241 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 SLC39A9Q9NUM3 307 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 ALG5Q9Y673 324 aa13.06□□□□□ -0.32
COL9A3-214ENST00000490398 FRAS1Q86XX4 4008 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 IGHV3OR16-12A0A075B7B8 117 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 NUPR2A6NF83 97 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 H3BQ15 152 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 RLN2P04090 185 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 RPL29P47914 159 aaKnown RBP13.05□□□□□ -0.32
COL9A3-214ENST00000490398 RAB31Q13636 194 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 CLINT1Q14677 625 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 ATP6V1FQ16864 119 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 SPATA31B1PQ5VZV4 182 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 C1orf158Q8N1D5 194 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 ZNF738Q8NE65 137 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 PXMP4Q9Y6I8 212 aa13.05□□□□□ -0.32
COL9A3-214ENST00000490398 ZNF705FA8MVS1 300 aaPredicted RBP13.04□□□□□ -0.32
COL9A3-214ENST00000490398 MPC2O95563 127 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 IGLC2P0DOY2 106 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 B2MP61769 119 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 PSG3Q16557 428 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 Q6ZRG5 221 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 ZNF767PQ75MW2 155 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 OR11H7Q8NGC8 314 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 NPCDR1Q9BY65 106 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 MFFQ9GZY8 342 aa13.04□□□□□ -0.32
COL9A3-214ENST00000490398 PRAC2D3DTV9 90 aa13.03□□□□□ -0.32
COL9A3-214ENST00000490398 JTBO76095 146 aa13.03□□□□□ -0.32
COL9A3-214ENST00000490398 PRM2P04554 102 aa13.03□□□□□ -0.32
COL9A3-214ENST00000490398 CYCSP99999 105 aaKnown RBP13.03□□□□□ -0.32
COL9A3-214ENST00000490398 CHAC2Q8WUX2 184 aa13.03□□□□□ -0.32
COL9A3-214ENST00000490398 SLC25A31Q9H0C2 315 aa13.03□□□□□ -0.32
COL9A3-214ENST00000490398 ZNF331Q9NQX6 463 aaPredicted RBP13.03□□□□□ -0.32
COL9A3-214ENST00000490398 M0R2Z0 102 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 CRXO43186 299 aaPredicted RBP13.02□□□□□ -0.33
COL9A3-214ENST00000490398 SPINK13Q1W4C9 94 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 Q6ZTC4 211 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 BPIFA4PQ86YQ2 179 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 OR8A1Q8NGG7 326 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 OR1L4Q8NGR5 311 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 LRRC20Q8TCA0 184 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 LINC00476Q8WZB0 136 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 SAT2Q96F10 170 aaPredicted RBP13.02□□□□□ -0.33
COL9A3-214ENST00000490398 DNAH17Q9UFH2 4485 aa13.02□□□□□ -0.33
COL9A3-214ENST00000490398 HIST1H1AQ02539 215 aaPredicted RBP13.01□□□□□ -0.33
COL9A3-214ENST00000490398 S100A7AQ86SG5 101 aa13.01□□□□□ -0.33
COL9A3-214ENST00000490398 RPUSD4Q96CM3 377 aaKnown RBP13.01□□□□□ -0.33
COL9A3-214ENST00000490398 HRH4Q9H3N8 390 aa13.01□□□□□ -0.33
COL9A3-214ENST00000490398 ZNF586Q9NXT0 402 aa13.01□□□□□ -0.33
COL9A3-214ENST00000490398 MBD2Q9UBB5 411 aa13.01□□□□□ -0.33
COL9A3-214ENST00000490398 TRAV12-2A0A075B6T6 113 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 DUSP14O95147 198 aaKnown RBP13□□□□□ -0.33
COL9A3-214ENST00000490398 PTTG1O95997 202 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 C12orf74Q32Q52 190 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 LCN15Q6UWW0 184 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 BAP18Q8IXM2 172 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 NEU1Q99519 415 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 SMIM3Q9BZL3 60 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 WDR61Q9GZS3 305 aaKnown RBP13□□□□□ -0.33
COL9A3-214ENST00000490398 KLK5Q9Y337 293 aaPredicted RBP13□□□□□ -0.33
COL9A3-214ENST00000490398 RFNGQ9Y644 331 aa13□□□□□ -0.33
COL9A3-214ENST00000490398 PYYP10082 97 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 CXCL2P19875 107 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 EMP1P54849 157 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 FCN2Q15485 313 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 IGF2BP2-AS1Q96M15 143 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 PFDN5Q99471 154 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 PARD6GQ9BYG4 376 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-214ENST00000490398 WFDC1Q9HC57 220 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 PLA2G2EQ9NZK7 142 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 HSPB11Q9Y547 144 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 FAT2Q9NYQ8 4349 aa12.99□□□□□ -0.33
COL9A3-214ENST00000490398 MPDU1O75352 247 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 LY6G6CO95867 125 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 RPL12P30050 165 aaKnown RBP12.98□□□□□ -0.33
COL9A3-214ENST00000490398 KIR3DS1Q14943 382 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 MIR17HGQ75NE6 70 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 FAM167A-AS1Q96KT0 104 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 SLC50A1Q9BRV3 221 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 RNF24Q9Y225 148 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 GOLT1BQ9Y3E0 138 aa12.98□□□□□ -0.33
COL9A3-214ENST00000490398 NDUFB4O95168 129 aa12.97□□□□□ -0.33
COL9A3-214ENST00000490398 RHOBP62745 196 aa12.97□□□□□ -0.33
COL9A3-214ENST00000490398 ATP5SQ99766 215 aa12.97□□□□□ -0.33
COL9A3-214ENST00000490398 SLC25A2Q9BXI2 301 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms