RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 DNAJC4Q9NNZ3 241 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 CELA1Q9UNI1 258 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 PXMP4Q9Y6I8 212 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 LYSTQ99698 3801 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 IGHV3OR16-12A0A075B7B8 117 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 MPC2O95563 127 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 RLN2P04090 185 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 IGLC2P0DOY2 106 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 MIFP14174 115 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 S100A7P31151 101 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 RPL29P47914 159 aaKnown RBP10.02□□□□□ -0.81
SYNE1-226ENST00000488376 CYCSP99999 105 aaKnown RBP10.02□□□□□ -0.81
SYNE1-226ENST00000488376 PSG9Q00887 426 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 RAB31Q13636 194 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 SAMD13Q5VXD3 122 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 ZNF705AQ6ZN79 300 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-226ENST00000488376 ZNF767PQ75MW2 155 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 NPCDR1Q9BY65 106 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 MFFQ9GZY8 342 aa10.02□□□□□ -0.81
SYNE1-226ENST00000488376 RYR2Q92736 4967 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 NUPR2A6NF83 97 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 ZNF705FA8MVS1 300 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-226ENST00000488376 M0R2Z0 102 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 PRM2P04554 102 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 ATP6V1FQ16864 119 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 SPATA31B1PQ5VZV4 182 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 Q6ZRG5 221 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 C1orf158Q8N1D5 194 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 OR11H7Q8NGC8 314 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 CHAC2Q8WUX2 184 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 C1QTNF4Q9BXJ3 329 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 SLC25A31Q9H0C2 315 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 ZNF331Q9NQX6 463 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-226ENST00000488376 MBD2Q9UBB5 411 aa10.01□□□□□ -0.81
SYNE1-226ENST00000488376 PRAC2D3DTV9 90 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 PTTG1O95997 202 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 HIST1H1AQ02539 215 aaPredicted RBP10□□□□□ -0.81
SYNE1-226ENST00000488376 PSG3Q16557 428 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 SPINK13Q1W4C9 94 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 BPIFA4PQ86YQ2 179 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 BAP18Q8IXM2 172 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 LRRC20Q8TCA0 184 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 SAT2Q96F10 170 aaPredicted RBP10□□□□□ -0.81
SYNE1-226ENST00000488376 SMIM3Q9BZL3 60 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 RFNGQ9Y644 331 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 SACSQ9NZJ4 4579 aa10□□□□□ -0.81
SYNE1-226ENST00000488376 CRXO43186 299 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-226ENST00000488376 FCN2Q15485 313 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 LCN15Q6UWW0 184 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 Q6ZTC4 211 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 S100A7AQ86SG5 101 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 OR8A1Q8NGG7 326 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 OR1L4Q8NGR5 311 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 RPUSD4Q96CM3 377 aaKnown RBP9.99□□□□□ -0.81
SYNE1-226ENST00000488376 WDR61Q9GZS3 305 aaKnown RBP9.99□□□□□ -0.81
SYNE1-226ENST00000488376 WFDC1Q9HC57 220 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 ZNF586Q9NXT0 402 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 HSPB11Q9Y547 144 aa9.99□□□□□ -0.81
SYNE1-226ENST00000488376 TRAV12-2A0A075B6T6 113 aa9.98□□□□□ -0.81
SYNE1-226ENST00000488376 JTBO76095 146 aa9.98□□□□□ -0.81
SYNE1-226ENST00000488376 PYYP10082 97 aa9.98□□□□□ -0.81
SYNE1-226ENST00000488376 EMP1P54849 157 aa9.98□□□□□ -0.81
SYNE1-226ENST00000488376 LINC00476Q8WZB0 136 aa9.98□□□□□ -0.81
SYNE1-226ENST00000488376 PFDN5Q99471 154 aa9.98□□□□□ -0.81
SYNE1-226ENST00000488376 PARD6GQ9BYG4 376 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-226ENST00000488376 HRH4Q9H3N8 390 aa9.98□□□□□ -0.81
SYNE1-226ENST00000488376 MPDU1O75352 247 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 DUSP14O95147 198 aaKnown RBP9.97□□□□□ -0.81
SYNE1-226ENST00000488376 CXCL2P19875 107 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 RPL12P30050 165 aaKnown RBP9.97□□□□□ -0.81
SYNE1-226ENST00000488376 KIR3DS1Q14943 382 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 C12orf74Q32Q52 190 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 Q5BKY6 102 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 MIR17HGQ75NE6 70 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 FAM167A-AS1Q96KT0 104 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 NEU1Q99519 415 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 ATP5SQ99766 215 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 SLC50A1Q9BRV3 221 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 SLC25A2Q9BXI2 301 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 PLA2G2EQ9NZK7 142 aa9.97□□□□□ -0.81
SYNE1-226ENST00000488376 BOLA2-SMG1P6H3BVE0 249 aa9.96□□□□□ -0.82
SYNE1-226ENST00000488376 EIF3GO75821 320 aaKnown RBP eCLIP9.96□□□□□ -0.82
SYNE1-226ENST00000488376 NDUFB4O95168 129 aa9.96□□□□□ -0.82
SYNE1-226ENST00000488376 IGF2BP2-AS1Q96M15 143 aa9.96□□□□□ -0.82
SYNE1-226ENST00000488376 RNF24Q9Y225 148 aa9.96□□□□□ -0.82
SYNE1-226ENST00000488376 KLK5Q9Y337 293 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-226ENST00000488376 ALMS1Q8TCU4 4167 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 TRBV19A0A075B6N1 114 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 ZNF705GA8MUZ8 300 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-226ENST00000488376 M0R3E3 92 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 LY6G6CO95867 125 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 PET100P0DJ07 73 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 RHOBP62745 196 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 MED28Q9H204 178 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 GOLT1BQ9Y3E0 138 aa9.95□□□□□ -0.82
SYNE1-226ENST00000488376 LOC102723971A0A1B0GUV8 181 aa9.94□□□□□ -0.82
SYNE1-226ENST00000488376 INSP01308 110 aa9.94□□□□□ -0.82
SYNE1-226ENST00000488376 EXOC3-AS1Q8N2X6 119 aa9.94□□□□□ -0.82
SYNE1-226ENST00000488376 BLNKQ8WV28 456 aa9.94□□□□□ -0.82
SYNE1-226ENST00000488376 TMEM14CQ9P0S9 112 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms