RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 S100A10P60903 97 aa11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 HIST1H1AQ02539 215 aaPredicted RBP11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 LINC00305Q7Z4B0 112 aa11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 NIPSNAP3BQ9BS92 247 aa11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 NDUFAF3Q9BU61 184 aa11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 PLA2G2EQ9NZK7 142 aa11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 YTHDF2Q9Y5A9 579 aaKnown RBP11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 TEX48A0A1B0GUV7 120 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 FAM240BA0A1B0GVZ2 78 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 FAM24AA6NFZ4 105 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 COX7A2P2O60397 106 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 CST7O76096 145 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 CXCL3P19876 107 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 RHOBP62745 196 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 PXDC1Q5TGL8 231 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 BAP18Q8IXM2 172 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 C2orf50Q96LR7 162 aa11.21□□□□□ -0.61
CCDC88B-205ENST00000472524 TRAV12-2A0A075B6T6 113 aa11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 BOLA2-SMG1P6H3BVE0 249 aa11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 MRPS12O15235 138 aaKnown RBP11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 CRXO43186 299 aaPredicted RBP11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 HTN3P15516 51 aa11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 PVALBP20472 110 aaPredicted RBP11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 PSG3Q16557 428 aa11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 OR8A1Q8NGG7 326 aa11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 C11orf1Q9H5F2 150 aa11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 RNF24Q9Y225 148 aa11.2□□□□□ -0.62
CCDC88B-205ENST00000472524 ZNF705GA8MUZ8 300 aaPredicted RBP11.19□□□□□ -0.62
CCDC88B-205ENST00000472524 PRM2P04554 102 aa11.19□□□□□ -0.62
CCDC88B-205ENST00000472524 CAMLGP49069 296 aa11.19□□□□□ -0.62
CCDC88B-205ENST00000472524 C10orf113Q5VZT2 155 aa11.19□□□□□ -0.62
CCDC88B-205ENST00000472524 MZT2BQ6NZ67 158 aa11.19□□□□□ -0.62
CCDC88B-205ENST00000472524 NRARPQ7Z6K4 114 aa11.19□□□□□ -0.62
CCDC88B-205ENST00000472524 PPP1R14DQ9NXH3 145 aa11.19□□□□□ -0.62
CCDC88B-205ENST00000472524 UBE2L5PA0A1B0GUS4 154 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 H3BTX0 84 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 P0DMU3 169 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 FAM231AP0DMU4 169 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 FAM231CP0DMU5 169 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 DAD1P61803 113 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 RAB31Q13636 194 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 RAB32Q13637 225 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 OPCMLQ14982 345 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 MORN5Q5VZ52 161 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 MIC13Q5XKP0 118 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 LCN15Q6UWW0 184 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 BPIFA4PQ86YQ2 179 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 S100ZQ8WXG8 99 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 TMEM37Q8WXS4 190 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 RPUSD4Q96CM3 377 aaKnown RBP11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 UQCC1Q9NVA1 299 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 NACAE9PAV3 2078 aa11.18□□□□□ -0.62
CCDC88B-205ENST00000472524 IGSF23A1L1A6 192 aa11.17□□□□□ -0.62
CCDC88B-205ENST00000472524 CXCL2P19875 107 aa11.17□□□□□ -0.62
CCDC88B-205ENST00000472524 BAXQ07812 192 aa11.17□□□□□ -0.62
CCDC88B-205ENST00000472524 SLC50A1Q9BRV3 221 aa11.17□□□□□ -0.62
CCDC88B-205ENST00000472524 ZNF331Q9NQX6 463 aaPredicted RBP11.17□□□□□ -0.62
CCDC88B-205ENST00000472524 LYRM2Q9NU23 88 aaPredicted RBP11.17□□□□□ -0.62
CCDC88B-205ENST00000472524 SLC17A3O00476 420 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 SULT1A1P50225 295 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 ASAH1Q13510 395 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 Q6ZRG5 221 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 LINC00299Q6ZSB3 139 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 STX12Q86Y82 276 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 POM121L12Q8N7R1 296 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 ENKURQ8TC29 256 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 DNAJC4Q9NNZ3 241 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 WDR83OSQ9Y284 106 aa11.16□□□□□ -0.62
CCDC88B-205ENST00000472524 TRAV5A0A0B4J249 113 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 B2MP61769 119 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 HBG1P69891 147 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 HBG2P69892 147 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 IL15RAQ13261 267 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 OXA1LQ15070 435 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 UBE2DNLQ8IWF7 75 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 TMEM252Q8N6L7 170 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 OR1L4Q8NGR5 311 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 FAM210BQ96KR6 192 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 LINC01587Q99440 93 aa11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 GPN1Q9HCN4 374 aaPredicted RBP11.15□□□□□ -0.62
CCDC88B-205ENST00000472524 DNAH2Q9P225 4427 aa11.15□□□□□ -0.63
CCDC88B-205ENST00000472524 IGLC2P0DOY2 106 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 HTN1P15515 57 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 AZU1P20160 251 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 FGF7P21781 194 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 S100A11P31949 105 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 VWC2Q2TAL6 325 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 PFDN5Q99471 154 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 PXMP4Q9Y6I8 212 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 DNAH17Q9UFH2 4485 aa11.14□□□□□ -0.63
CCDC88B-205ENST00000472524 FAT2Q9NYQ8 4349 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 LYRM9A8MSI8 78 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 PRAC2D3DTV9 90 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 H3BQ15 152 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 UPK1BO75841 260 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 SIX6O95475 246 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 DEFB130BP0DP73 79 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 DEFB130AP0DP74 79 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 CDKN1BP46527 198 aa11.13□□□□□ -0.63
CCDC88B-205ENST00000472524 RPL29P47914 159 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms