RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ZNF738Q8NE65 137 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 SLC50A1Q9BRV3 221 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 HRH4Q9H3N8 390 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 FUT9Q9Y231 359 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 RFNGQ9Y644 331 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 BORCS7-ASMTA0A0B4J1R7 106 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 H3BMM0 161 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 SPRY2O43597 315 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 GUK1Q16774 197 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 OVOL2Q9BRP0 275 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 SLC25A2Q9BXI2 301 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 MFFQ9GZY8 342 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 TMEM14CQ9P0S9 112 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 TP53TG1Q9Y2A0 90 aa16.77■□□□□ 0.28
CCDC28B-203ENST00000461819 F6UB75 175 aa16.76■□□□□ 0.27
CCDC28B-203ENST00000461819 H3BQ15 152 aa16.76■□□□□ 0.27
CCDC28B-203ENST00000461819 IGKV3-20P01619 116 aa16.76■□□□□ 0.27
CCDC28B-203ENST00000461819 RHOBP62745 196 aa16.76■□□□□ 0.27
CCDC28B-203ENST00000461819 ACOT6Q3I5F7 207 aaPredicted RBP16.76■□□□□ 0.27
CCDC28B-203ENST00000461819 WWC2-AS2Q96NR7 200 aa16.76■□□□□ 0.27
CCDC28B-203ENST00000461819 hCG_2014768A0A024R1R8 64 aa16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 SLC17A3O00476 420 aa16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 PYYP10082 97 aa16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 HLA-DMBP28068 263 aa16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 NUTF2P61970 127 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 RPL7L1Q6DKI1 246 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 OR4B1Q8NGF8 309 aa16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 RNF183Q96D59 192 aa16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 ZNF331Q9NQX6 463 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-203ENST00000461819 A0A0J9YX75 114 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 M6PRP20645 277 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 C4BPBP20851 252 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 ATP6V0CP27449 155 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 PSG3Q16557 428 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 TMEM41BQ5BJD5 291 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 PSMG3Q9BT73 122 aaPredicted RBP16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 ZNF586Q9NXT0 402 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 STAB2Q8WWQ8 2551 aa16.74■□□□□ 0.27
CCDC28B-203ENST00000461819 TAAR5O14804 337 aa16.73■□□□□ 0.27
CCDC28B-203ENST00000461819 OR7C2O60412 319 aa16.73■□□□□ 0.27
CCDC28B-203ENST00000461819 HIST1H1EP10412 219 aaKnown RBP16.73■□□□□ 0.27
CCDC28B-203ENST00000461819 BLNKQ8WV28 456 aa16.73■□□□□ 0.27
CCDC28B-203ENST00000461819 FAM167A-AS1Q96KT0 104 aa16.73■□□□□ 0.27
CCDC28B-203ENST00000461819 A0A1W2PPV4 95 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 TAS2R45P59539 299 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 RAB2AP61019 212 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 KHDC3LQ587J8 217 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 OR11H4Q8NGC9 324 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 OR2G3Q8NGZ4 309 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 GNPNAT1Q96EK6 184 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 SAT2Q96F10 170 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 PAXXQ9BUH6 204 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 SH3BGRL3Q9H299 93 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 OR51M1Q9H341 326 aa16.72■□□□□ 0.27
CCDC28B-203ENST00000461819 TRBV19A0A075B6N1 114 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 HMSDA8MTL9 139 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 ZNF253O75346 499 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 ZNF345Q14585 488 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 FAM122CQ6P4D5 195 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 OR10G4Q8NGN3 311 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 OR10G9Q8NGN4 311 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 OR10G7Q8NGN6 311 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 RPUSD4Q96CM3 377 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 C1QTNF4Q9BXJ3 329 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 CLEC5AQ9NY25 188 aa16.71■□□□□ 0.27
CCDC28B-203ENST00000461819 JTBO76095 146 aa16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 DUSP14O95147 198 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 GIG44P09565 113 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 OR10J4P0C629 311 aa16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 ZNF705DP0CH99 300 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 ZNF705BP0CI00 300 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 SERF2P84101 59 aa16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 PDE6HQ13956 83 aa16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 ST6GAL2Q96JF0 529 aa16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 CLUHP3Q96NS8 147 aa16.7■□□□□ 0.26
CCDC28B-203ENST00000461819 CNN1P51911 297 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 FXYD7P58549 80 aa16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 UBE2L3P68036 154 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 PSG9Q00887 426 aa16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 HIST1H1AQ02539 215 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 KCNRGQ8N5I3 272 aa16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 RNF141Q8WVD5 230 aa16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 ARPC5LQ9BPX5 153 aa16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 XCL2Q9UBD3 114 aa16.69■□□□□ 0.26
CCDC28B-203ENST00000461819 MBP02144 154 aa16.68■□□□□ 0.26
CCDC28B-203ENST00000461819 NBEAP1P0C6P0 100 aa16.68■□□□□ 0.26
CCDC28B-203ENST00000461819 PRB4P10163 310 aaPredicted RBP16.68■□□□□ 0.26
CCDC28B-203ENST00000461819 OR8A1Q8NGG7 326 aa16.68■□□□□ 0.26
CCDC28B-203ENST00000461819 FXYD5Q96DB9 178 aa16.68■□□□□ 0.26
CCDC28B-203ENST00000461819 RARRES2Q99969 163 aa16.68■□□□□ 0.26
CCDC28B-203ENST00000461819 AAMDCQ9H7C9 122 aa16.68■□□□□ 0.26
CCDC28B-203ENST00000461819 A0A0D9SG52 128 aa16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 ZNF705FA8MVS1 300 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 EIF3GO75821 320 aaKnown RBP eCLIP16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 NDUFB4O95168 129 aa16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 CDC34P49427 236 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 AKAP14Q86UN6 197 aa16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 TCTE3Q8IZS6 198 aa16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 OR11H2Q8NH07 326 aa16.67■□□□□ 0.26
CCDC28B-203ENST00000461819 SLC35B3Q9H1N7 401 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms