RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 NPCDR1Q9BY65 106 aa13.56□□□□□ -0.24
USP39-209ENST00000458268 MED28Q9H204 178 aa13.56□□□□□ -0.24
USP39-209ENST00000458268 C11orf68Q9H3H3 251 aaKnown RBP13.56□□□□□ -0.24
USP39-209ENST00000458268 PPP1R14DQ9NXH3 145 aa13.56□□□□□ -0.24
USP39-209ENST00000458268 X6R8D5 127 aa13.56□□□□□ -0.24
USP39-209ENST00000458268 A0A087X0K7 114 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 JTBO76095 146 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 MIFP14174 115 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 CXCL3P19876 107 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 CNN1P51911 297 aaKnown RBP13.55□□□□□ -0.24
USP39-209ENST00000458268 RHOBP62745 196 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 GCSAMLQ5JQS6 135 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 SPATA31B1PQ5VZV4 182 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 LCN15Q6UWW0 184 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 CSNK1G2-AS1Q8NCQ2 148 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 RNF126Q9BV68 326 aa13.55□□□□□ -0.24
USP39-209ENST00000458268 KMT2CQ8NEZ4 4911 aaKnown RBP13.55□□□□□ -0.24
USP39-209ENST00000458268 TENM2Q9NT68 2774 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 STARD9Q9P2P6 4700 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 CSMD3Q7Z407 3707 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 LCE6AA0A183 80 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 NUPR2A6NF83 97 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 MRPS12O15235 138 aaKnown RBP13.54□□□□□ -0.24
USP39-209ENST00000458268 RBMY1A1P0DJD3 496 aaKnown RBP13.54□□□□□ -0.24
USP39-209ENST00000458268 RBMY1CP0DJD4 496 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 RPL12P30050 165 aaKnown RBP13.54□□□□□ -0.24
USP39-209ENST00000458268 EMP1P54849 157 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 RBMY1FQ15415 496 aaKnown RBP13.54□□□□□ -0.24
USP39-209ENST00000458268 FCN2Q15485 313 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 PSG3Q16557 428 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 PHLDA1Q8WV24 401 aaPredicted RBP13.54□□□□□ -0.24
USP39-209ENST00000458268 HSPB11Q9Y547 144 aa13.54□□□□□ -0.24
USP39-209ENST00000458268 ZNF705EA8MWA4 302 aaPredicted RBP13.53□□□□□ -0.24
USP39-209ENST00000458268 M0R2Z0 102 aa13.53□□□□□ -0.24
USP39-209ENST00000458268 SLC17A3O00476 420 aa13.53□□□□□ -0.24
USP39-209ENST00000458268 MPDU1O75352 247 aa13.53□□□□□ -0.24
USP39-209ENST00000458268 DUSP14O95147 198 aaKnown RBP13.53□□□□□ -0.24
USP39-209ENST00000458268 SPINK13Q1W4C9 94 aa13.53□□□□□ -0.24
USP39-209ENST00000458268 RPUSD4Q96CM3 377 aaKnown RBP13.53□□□□□ -0.24
USP39-209ENST00000458268 ATP5SQ99766 215 aa13.53□□□□□ -0.24
USP39-209ENST00000458268 TMEM208Q9BTX3 173 aa13.53□□□□□ -0.24
USP39-209ENST00000458268 ZNF705FA8MVS1 300 aaPredicted RBP13.52□□□□□ -0.25
USP39-209ENST00000458268 CEMP1Q6PRD7 247 aaPredicted RBP13.52□□□□□ -0.25
USP39-209ENST00000458268 ZNF767PQ75MW2 155 aa13.52□□□□□ -0.25
USP39-209ENST00000458268 SLC50A1Q9BRV3 221 aa13.52□□□□□ -0.25
USP39-209ENST00000458268 WDR61Q9GZS3 305 aaKnown RBP13.52□□□□□ -0.25
USP39-209ENST00000458268 KLK5Q9Y337 293 aaPredicted RBP13.52□□□□□ -0.25
USP39-209ENST00000458268 GOLT1BQ9Y3E0 138 aa13.52□□□□□ -0.25
USP39-209ENST00000458268 C17orf112F2Z3M2 114 aa13.51□□□□□ -0.25
USP39-209ENST00000458268 H3BQ15 152 aa13.51□□□□□ -0.25
USP39-209ENST00000458268 IFNA5P01569 189 aa13.51□□□□□ -0.25
USP39-209ENST00000458268 OR11H7Q8NGC8 314 aa13.51□□□□□ -0.25
USP39-209ENST00000458268 OR8A1Q8NGG7 326 aa13.51□□□□□ -0.25
USP39-209ENST00000458268 SCGB1C1Q8TD33 95 aa13.51□□□□□ -0.25
USP39-209ENST00000458268 BLNKQ8WV28 456 aa13.51□□□□□ -0.25
USP39-209ENST00000458268 ZNF331Q9NQX6 463 aaPredicted RBP13.51□□□□□ -0.25
USP39-209ENST00000458268 PYYP10082 97 aa13.5□□□□□ -0.25
USP39-209ENST00000458268 CXCL2P19875 107 aa13.5□□□□□ -0.25
USP39-209ENST00000458268 BAP18Q8IXM2 172 aa13.5□□□□□ -0.25
USP39-209ENST00000458268 KCNIP2Q9NS61 270 aa13.5□□□□□ -0.25
USP39-209ENST00000458268 TRAV12-2A0A075B6T6 113 aa13.49□□□□□ -0.25
USP39-209ENST00000458268 IGLC2P0DOY2 106 aa13.49□□□□□ -0.25
USP39-209ENST00000458268 RGS21Q2M5E4 152 aa13.49□□□□□ -0.25
USP39-209ENST00000458268 MIR17HGQ75NE6 70 aa13.49□□□□□ -0.25
USP39-209ENST00000458268 CELA1Q9UNI1 258 aa13.49□□□□□ -0.25
USP39-209ENST00000458268 BOLA2-SMG1P6H3BVE0 249 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 INSP01308 110 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 FFAR4Q5NUL3 377 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 AMTNQ6UX39 209 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 ZNF705AQ6ZN79 300 aaPredicted RBP13.48□□□□□ -0.25
USP39-209ENST00000458268 CHAC2Q8WUX2 184 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 CLUHP3Q96NS8 147 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 HRH4Q9H3N8 390 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 ZNF586Q9NXT0 402 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 TIMM9Q9Y5J7 89 aa13.48□□□□□ -0.25
USP39-209ENST00000458268 PRAC2D3DTV9 90 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 J3KRW8 73 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 HBE1P02100 147 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 C1orf158Q8N1D5 194 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 OR10J6PQ8NGY7 276 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 IGF2BP2-AS1Q96M15 143 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 SLC25A2Q9BXI2 301 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 PARD6GQ9BYG4 376 aaPredicted RBP13.47□□□□□ -0.25
USP39-209ENST00000458268 RFNGQ9Y644 331 aa13.47□□□□□ -0.25
USP39-209ENST00000458268 LOC102723971A0A1B0GUV8 181 aa13.46□□□□□ -0.25
USP39-209ENST00000458268 LY6G6CO95867 125 aa13.46□□□□□ -0.25
USP39-209ENST00000458268 GUK1Q16774 197 aa13.46□□□□□ -0.25
USP39-209ENST00000458268 Q6ZTC4 211 aa13.46□□□□□ -0.25
USP39-209ENST00000458268 WFDC1Q9HC57 220 aa13.46□□□□□ -0.25
USP39-209ENST00000458268 OR7C2O60412 319 aa13.45□□□□□ -0.26
USP39-209ENST00000458268 EIF3GO75821 320 aaKnown RBP eCLIP13.45□□□□□ -0.26
USP39-209ENST00000458268 AMBPP02760 352 aa13.45□□□□□ -0.26
USP39-209ENST00000458268 OR10J4P0C629 311 aa13.45□□□□□ -0.26
USP39-209ENST00000458268 HTN1P15515 57 aa13.45□□□□□ -0.26
USP39-209ENST00000458268 RRN3P1Q2M238 152 aa13.45□□□□□ -0.26
USP39-209ENST00000458268 SAT2Q96F10 170 aaPredicted RBP13.45□□□□□ -0.26
USP39-209ENST00000458268 TRBV19A0A075B6N1 114 aa13.44□□□□□ -0.26
USP39-209ENST00000458268 A8MTW9 85 aa13.44□□□□□ -0.26
USP39-209ENST00000458268 ZNF705GA8MUZ8 300 aaPredicted RBP13.44□□□□□ -0.26
USP39-209ENST00000458268 IGLL5B9A064 214 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms