RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CNN1P51911 297 aaKnown RBP10.38□□□□□ -0.75
LIMS1-204ENST00000409441 RNF152Q8N8N0 203 aa10.38□□□□□ -0.75
LIMS1-204ENST00000409441 IGF2BP2-AS1Q96M15 143 aa10.38□□□□□ -0.75
LIMS1-204ENST00000409441 HIGD1AQ9Y241 93 aa10.38□□□□□ -0.75
LIMS1-204ENST00000409441 IGLV11-55A0A075B6I3 123 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 TRAV30A0A087WSZ9 112 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 TRBV9A0A0B4J1U6 114 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 IGHV3-21A0A0B4J1V1 117 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 OR2J3O76001 311 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 HIST1H1BP16401 226 aaKnown RBP10.37□□□□□ -0.75
LIMS1-204ENST00000409441 MYCNOSP40205 109 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 TPPP2P59282 170 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 RHOGP84095 191 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 KLK9Q2XQG4 91 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 HIST2H2BDQ6DRA6 164 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 C12orf54Q6X4T0 127 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 HIST3H2BBQ8N257 126 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 GAR1Q9NY12 217 aaKnown RBP10.37□□□□□ -0.75
LIMS1-204ENST00000409441 TMEM14CQ9P0S9 112 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 FBXL7Q9UJT9 491 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 KLK9Q9UKQ9 250 aa10.37□□□□□ -0.75
LIMS1-204ENST00000409441 ZNF320A2RRD8 509 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 PEX7O00628 323 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 ISLRO14498 428 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 PSG1P11464 419 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 GP9P14770 177 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 S100A2P29034 98 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 ERVFC1-1P60608 527 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 RPL19P84098 196 aaKnown RBP10.36□□□□□ -0.75
LIMS1-204ENST00000409441 RPEL1Q2QD12 228 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 COA6Q5JTJ3 125 aaKnown RBP10.36□□□□□ -0.75
LIMS1-204ENST00000409441 C3orf56Q8N813 242 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 CITED2Q99967 270 aaPredicted RBP10.36□□□□□ -0.75
LIMS1-204ENST00000409441 THYN1Q9P016 225 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 V9GYV3 84 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 NDUFB8O95169 186 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 TOMM40O96008 361 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 NBEAP1P0C6P0 100 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 S100A12P80511 92 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 S100A7AQ86SG5 101 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 ZNF491Q8N8L2 437 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 MYOZ3Q8TDC0 251 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 SMIM12Q96EX1 92 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 USMG5Q96IX5 58 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 ZNF747Q9BV97 191 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 TENM1Q9UKZ4 2725 aa10.36□□□□□ -0.75
LIMS1-204ENST00000409441 A0A0G2JLM5 398 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 IGKV1-17P01599 117 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 IGLV2-8P01709 118 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 RD3LP0DJH9 198 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 YPEL3P61236 119 aaPredicted RBP10.35□□□□□ -0.75
LIMS1-204ENST00000409441 LYZP61626 148 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 ATP5G2Q06055 141 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 C15orf32Q32M92 178 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 KHDC1LQ5JSQ8 128 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 TMEM183AQ8IXX5 376 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 UBE2E2Q96LR5 201 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 MRPL27Q9P0M9 148 aaKnown RBP10.35□□□□□ -0.75
LIMS1-204ENST00000409441 EPDR1Q9UM22 224 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 RNF24Q9Y225 148 aa10.35□□□□□ -0.75
LIMS1-204ENST00000409441 FAM223BA6NKX1 122 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 IFITM10A6NMD0 228 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 MFAP4P55083 255 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 TMEM183BQ1AE95 376 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 FAM231DQ6ZW35 169 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 FAM223AQ8IWN6 122 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 CITED1Q99966 193 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 SLC25A39Q9BZJ4 359 aaPredicted RBP10.34□□□□□ -0.75
LIMS1-204ENST00000409441 TRAPPC1Q9Y5R8 145 aa10.34□□□□□ -0.75
LIMS1-204ENST00000409441 TSSC4Q9Y5U2 329 aaPredicted RBP10.34□□□□□ -0.75
LIMS1-204ENST00000409441 SCGB2A1O75556 95 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 IGHV3-11P01762 117 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 OR5I1Q13606 314 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 COX19Q49B96 90 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 C5orf17Q8NAS9 161 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 CHRDL1Q9BU40 450 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 KLF12Q9Y4X4 402 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 S4R3C0 116 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 WI2-2373I1.2A0A1W2PRP0 233 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 A0A1W2PRX2 142 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 XKRY2A2RUG3 117 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 PGPA6NDG6 321 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 SLC17A3O00476 420 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 SLC25A5P05141 298 aaKnown RBP10.33□□□□□ -0.76
LIMS1-204ENST00000409441 HIST1H1EP10412 219 aaKnown RBP10.33□□□□□ -0.76
LIMS1-204ENST00000409441 RANP62826 216 aaKnown RBP10.33□□□□□ -0.76
LIMS1-204ENST00000409441 KRTAP21-3Q3LHN1 58 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 IBA57Q5T440 356 aaKnown RBP10.33□□□□□ -0.76
LIMS1-204ENST00000409441 ZNF600Q6ZNG1 722 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 C18orf65Q6ZTR6 163 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 VN1R17PQ8TDU5 208 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 BLNKQ8WV28 456 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 ATG101Q9BSB4 218 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 SHANK2-AS3Q9BTD1 123 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 GNB4Q9HAV0 340 aa10.33□□□□□ -0.76
LIMS1-204ENST00000409441 H3BRN7 92 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 GNG7O60262 68 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 IGHV3-23P01764 117 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 MGST1P10620 155 aaKnown RBP10.32□□□□□ -0.76
LIMS1-204ENST00000409441 FCGR2BP31994 310 aaPredicted RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms