RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 IGLC2P0DOY2 106 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 GCSAMLQ5JQS6 135 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 FAM78BQ5VT40 261 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 IGFL4Q6B9Z1 124 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 ZNF738Q8NE65 137 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 OR2T35Q8NGX2 323 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 OR11H2Q8NH07 326 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 A0A0J9YWU9 116 aa12.38□□□□□ -0.43
CLN3-203ENST00000357806 ZNF266Q14584 549 aa12.38□□□□□ -0.43
CLN3-203ENST00000357806 GUK1Q16774 197 aa12.38□□□□□ -0.43
CLN3-203ENST00000357806 IL17DQ8TAD2 202 aa12.38□□□□□ -0.43
CLN3-203ENST00000357806 MRPL32Q9BYC8 188 aaKnown RBP12.38□□□□□ -0.43
CLN3-203ENST00000357806 ZNF331Q9NQX6 463 aaPredicted RBP12.38□□□□□ -0.43
CLN3-203ENST00000357806 SNRPCP09234 159 aaKnown RBP12.37□□□□□ -0.43
CLN3-203ENST00000357806 Q5BKY6 102 aa12.37□□□□□ -0.43
CLN3-203ENST00000357806 INO80EQ8NBZ0 244 aaPredicted RBP12.37□□□□□ -0.43
CLN3-203ENST00000357806 WFDC1Q9HC57 220 aa12.37□□□□□ -0.43
CLN3-203ENST00000357806 TMEM14CQ9P0S9 112 aa12.37□□□□□ -0.43
CLN3-203ENST00000357806 FXYD6-FXYD2A0A087WZ82 144 aa12.36□□□□□ -0.43
CLN3-203ENST00000357806 DUSP14O95147 198 aaKnown RBP12.36□□□□□ -0.43
CLN3-203ENST00000357806 HLA-DMBP28068 263 aa12.36□□□□□ -0.43
CLN3-203ENST00000357806 PSG3Q16557 428 aa12.36□□□□□ -0.43
CLN3-203ENST00000357806 FFAR4Q5NUL3 377 aa12.36□□□□□ -0.43
CLN3-203ENST00000357806 CSNK1G2-AS1Q8NCQ2 148 aa12.36□□□□□ -0.43
CLN3-203ENST00000357806 CLEC5AQ9NY25 188 aa12.36□□□□□ -0.43
CLN3-203ENST00000357806 XCL2Q9UBD3 114 aa12.36□□□□□ -0.43
CLN3-203ENST00000357806 H3BQ15 152 aa12.35□□□□□ -0.43
CLN3-203ENST00000357806 H3BTX0 84 aa12.35□□□□□ -0.43
CLN3-203ENST00000357806 SLC17A3O00476 420 aa12.35□□□□□ -0.43
CLN3-203ENST00000357806 PSG9Q00887 426 aa12.35□□□□□ -0.43
CLN3-203ENST00000357806 CASC10Q5T4H9 136 aa12.35□□□□□ -0.43
CLN3-203ENST00000357806 SLC25A2Q9BXI2 301 aa12.35□□□□□ -0.43
CLN3-203ENST00000357806 A8MTW9 85 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 ZNF705EA8MWA4 302 aaPredicted RBP12.34□□□□□ -0.43
CLN3-203ENST00000357806 ZNF253O75346 499 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 CNN1P51911 297 aaKnown RBP12.34□□□□□ -0.43
CLN3-203ENST00000357806 MIR17HGQ75NE6 70 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 SAT2Q96F10 170 aaPredicted RBP12.34□□□□□ -0.43
CLN3-203ENST00000357806 MFFQ9GZY8 342 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 C11orf68Q9H3H3 251 aaKnown RBP12.34□□□□□ -0.43
CLN3-203ENST00000357806 ZNF586Q9NXT0 402 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 TNFSF18Q9UNG2 199 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 FUT9Q9Y231 359 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 TIMM9Q9Y5J7 89 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 CSMD3Q7Z407 3707 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 PYYP10082 97 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 HIST1H1EP10412 219 aaKnown RBP12.34□□□□□ -0.43
CLN3-203ENST00000357806 FXYD7P58549 80 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 PDE6HQ13956 83 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 OR8A1Q8NGG7 326 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 RPUSD4Q96CM3 377 aaKnown RBP12.34□□□□□ -0.43
CLN3-203ENST00000357806 SLC35B3Q9H1N7 401 aa12.34□□□□□ -0.43
CLN3-203ENST00000357806 TRBV19A0A075B6N1 114 aa12.33□□□□□ -0.44
CLN3-203ENST00000357806 RNF222A6NCQ9 220 aa12.33□□□□□ -0.44
CLN3-203ENST00000357806 G3V3Q6 166 aa12.33□□□□□ -0.44
CLN3-203ENST00000357806 MIFP14174 115 aa12.33□□□□□ -0.44
CLN3-203ENST00000357806 RHOBP62745 196 aa12.33□□□□□ -0.44
CLN3-203ENST00000357806 HIST1H1AQ02539 215 aaPredicted RBP12.33□□□□□ -0.44
CLN3-203ENST00000357806 ZFAND6Q6FIF0 208 aa12.33□□□□□ -0.44
CLN3-203ENST00000357806 FAM167A-AS1Q96KT0 104 aa12.33□□□□□ -0.44
CLN3-203ENST00000357806 ZNF705DP0CH99 300 aaPredicted RBP12.32□□□□□ -0.44
CLN3-203ENST00000357806 ZNF705BP0CI00 300 aaPredicted RBP12.32□□□□□ -0.44
CLN3-203ENST00000357806 ACOT6Q3I5F7 207 aaPredicted RBP12.32□□□□□ -0.44
CLN3-203ENST00000357806 AMTNQ6UX39 209 aa12.32□□□□□ -0.44
CLN3-203ENST00000357806 Q8NAQ8 132 aa12.32□□□□□ -0.44
CLN3-203ENST00000357806 OR51M1Q9H341 326 aa12.32□□□□□ -0.44
CLN3-203ENST00000357806 OR7C2O60412 319 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 AMBPP02760 352 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 M6PRP20645 277 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 TAS2R45P59539 299 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 KHDC3LQ587J8 217 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 HSD17B11Q8NBQ5 300 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 BLNKQ8WV28 456 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 PAXXQ9BUH6 204 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 X6R8D5 127 aa12.31□□□□□ -0.44
CLN3-203ENST00000357806 ZNF705AQ6ZN79 300 aaPredicted RBP12.3□□□□□ -0.44
CLN3-203ENST00000357806 MRPL53Q96EL3 112 aaKnown RBP12.3□□□□□ -0.44
CLN3-203ENST00000357806 PSMG3Q9BT73 122 aaPredicted RBP12.3□□□□□ -0.44
CLN3-203ENST00000357806 AAMDCQ9H7C9 122 aa12.3□□□□□ -0.44
CLN3-203ENST00000357806 RFNGQ9Y644 331 aa12.3□□□□□ -0.44
CLN3-203ENST00000357806 IGHV4-28A0A0C4DH34 117 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 ZNF705FA8MVS1 300 aaPredicted RBP12.29□□□□□ -0.44
CLN3-203ENST00000357806 BOLA2-SMG1P6H3BVE0 249 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 ARPC5O15511 151 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 SPINK13Q1W4C9 94 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 OR10J6PQ8NGY7 276 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 OR2G3Q8NGZ4 309 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 PPP1R14DQ9NXH3 145 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 PRELID1Q9Y255 219 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 GOLT1BQ9Y3E0 138 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 STARD9Q9P2P6 4700 aa12.29□□□□□ -0.44
CLN3-203ENST00000357806 BORCS7-ASMTA0A0B4J1R7 106 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 A0A1W2PPV4 95 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 DEFB4AO15263 64 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 NDUFB4O95168 129 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 OR10J4P0C629 311 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 NBEAP1P0C6P0 100 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 ATP6V0CP27449 155 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 RNF141Q8WVD5 230 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 FXYD5Q96DB9 178 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms