RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 ACOT6Q3I5F7 207 aaPredicted RBP4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 TMEM41BQ5BJD5 291 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 PRR31Q5SQ13 230 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 AKR1C8PQ5T2L2 129 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 IQCF2Q8IXL9 164 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 BAP18Q8IXM2 172 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 RPP25LQ8N5L8 163 aaKnown RBP4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 RNF182Q8N6D2 247 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 OR10G4Q8NGN3 311 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 OR10G9Q8NGN4 311 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 OR10G7Q8NGN6 311 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 BLNKQ8WV28 456 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 PHYHIPLQ96FC7 376 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 ASCL2Q99929 193 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 PSMG3Q9BT73 122 aaPredicted RBP4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 PEMTQ9UBM1 199 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 FUT9Q9Y231 359 aa4.86□□□□□ -1.63
DEPDC4-201ENST00000299185 TRAV8-2A0A0B4J237 113 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 MAP1LC3B2A6NCE7 125 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 K7EMT4 169 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 BUB3O43684 328 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 OR7C2O60412 319 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 IGLV1-51P01701 117 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 CD7P09564 240 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 ZNF688P0C7X2 276 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 ARL14EPLP0DKL9 152 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 M6PRP20645 277 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 SUMO1P63165 101 aaKnown RBP4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 EIF5AP63241 154 aaKnown RBP4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 UBE2L3P68036 154 aaKnown RBP4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 C9orf66Q5T8R8 295 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 FAM90A2PQ658T7 463 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 TEX261Q6UWH6 196 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 SIGLEC15Q6ZMC9 328 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 Q6ZRG5 221 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 OR8I2Q8N0Y5 310 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 ZNF680Q8NEM1 530 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 OR1L4Q8NGR5 311 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 RAB24Q969Q5 203 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 GNPNAT1Q96EK6 184 aaPredicted RBP4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 MAP1LC3BQ9GZQ8 125 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 DNAJC4Q9NNZ3 241 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 KCNIP2Q9NS61 270 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 ZNF586Q9NXT0 402 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 CMYA5Q8N3K9 4069 aa4.85□□□□□ -1.63
DEPDC4-201ENST00000299185 KNCNA6PVL3 124 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 ZNF785A8K8V0 405 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 F6UB75 175 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 SOCS3O14543 225 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 IFNA7P01567 189 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 IGLC2P0DOY2 106 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 GCHFRP30047 84 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 UBE2G2P60604 165 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 RHOBP62745 196 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 GNG5P63218 68 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 CCL20P78556 96 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 ODF3L2Q3SX64 289 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 ZNF767PQ75MW2 155 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 EXOC3-AS1Q8N2X6 119 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 WFDC9Q8NEX5 89 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 FXYD5Q96DB9 178 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 PFDN5Q99471 154 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 PAXXQ9BUH6 204 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 MRPL32Q9BYC8 188 aaKnown RBP4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 MS4A6AQ9H2W1 248 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 CDIP1Q9H305 208 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 TECRQ9NZ01 308 aaKnown RBP4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 RPH3ALQ9UNE2 315 aa4.84□□□□□ -1.63
DEPDC4-201ENST00000299185 CTXND1A0A1B0GTU2 59 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 PRAC2D3DTV9 90 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 K7EQG2 157 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 M0R3E3 92 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 NDUFB4O95168 129 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 SEC11BP0C7V7 166 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF705DP0CH99 300 aaPredicted RBP4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF705BP0CI00 300 aaPredicted RBP4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 GALR1P47211 349 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 SULT1A2P50226 295 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 CD81P60033 236 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 BEAN1Q3B7T3 259 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 PSMG4Q5JS54 123 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 EIF5AL1Q6IS14 154 aaKnown RBP4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 APRG1Q8IVJ8 170 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 DCANP1Q8TF63 244 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 MARC2Q969Z3 335 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 GRAMD2BQ96HH9 432 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 NARS2Q96I59 477 aaKnown RBP4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 ACTR3CQ9C0K3 210 aaPredicted RBP4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 MAP6D1Q9H9H5 199 aa4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 YTHDF2Q9Y5A9 579 aaKnown RBP4.83□□□□□ -1.64
DEPDC4-201ENST00000299185 IGKV2-40A0A087WW87 121 aaPredicted RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 A0A1W2PPV4 95 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 RBMY1BA6NDE4 496 aaKnown RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 RBMY1EA6NEQ0 496 aaKnown RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF705FA8MVS1 300 aaPredicted RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF705EA8MWA4 302 aaPredicted RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 IGKV2D-40P01614 121 aaPredicted RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 RBMY1DP0C7P1 496 aaKnown RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 STAG3L2P0CL84 134 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 STAG3L3P0CL85 134 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms