RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 MFFQ9GZY8 342 aa16.57■□□□□ 0.24
LSM4-201ENST00000252816 RNF24Q9Y225 148 aa16.57■□□□□ 0.24
LSM4-201ENST00000252816 SNRPCP09234 159 aaKnown RBP16.56■□□□□ 0.24
LSM4-201ENST00000252816 ZNF705DP0CH99 300 aaPredicted RBP16.56■□□□□ 0.24
LSM4-201ENST00000252816 ZNF705BP0CI00 300 aaPredicted RBP16.56■□□□□ 0.24
LSM4-201ENST00000252816 CXCL3P19876 107 aa16.56■□□□□ 0.24
LSM4-201ENST00000252816 RPL29P47914 159 aaKnown RBP16.56■□□□□ 0.24
LSM4-201ENST00000252816 Q6ZRG5 221 aa16.56■□□□□ 0.24
LSM4-201ENST00000252816 CHAC2Q8WUX2 184 aa16.56■□□□□ 0.24
LSM4-201ENST00000252816 PPP1R1CQ8WVI7 109 aa16.56■□□□□ 0.24
LSM4-201ENST00000252816 SLC39A9Q9NUM3 307 aa16.56■□□□□ 0.24
LSM4-201ENST00000252816 CNN1P51911 297 aaKnown RBP16.55■□□□□ 0.24
LSM4-201ENST00000252816 B2MP61769 119 aa16.55■□□□□ 0.24
LSM4-201ENST00000252816 ZNF738Q8NE65 137 aa16.55■□□□□ 0.24
LSM4-201ENST00000252816 OR5C1Q8NGR4 320 aa16.55■□□□□ 0.24
LSM4-201ENST00000252816 RNF126Q9BV68 326 aa16.55■□□□□ 0.24
LSM4-201ENST00000252816 SLC25A31Q9H0C2 315 aa16.55■□□□□ 0.24
LSM4-201ENST00000252816 KLK5Q9Y337 293 aaPredicted RBP16.55■□□□□ 0.24
LSM4-201ENST00000252816 PXMP4Q9Y6I8 212 aa16.55■□□□□ 0.24
LSM4-201ENST00000252816 TRAV5A0A0B4J249 113 aa16.54■□□□□ 0.24
LSM4-201ENST00000252816 ZNF705FA8MVS1 300 aaPredicted RBP16.54■□□□□ 0.24
LSM4-201ENST00000252816 PRB4P10163 310 aaPredicted RBP16.54■□□□□ 0.24
LSM4-201ENST00000252816 BPIFA4PQ86YQ2 179 aa16.54■□□□□ 0.24
LSM4-201ENST00000252816 OR1L4Q8NGR5 311 aa16.54■□□□□ 0.24
LSM4-201ENST00000252816 HRH4Q9H3N8 390 aa16.54■□□□□ 0.24
LSM4-201ENST00000252816 IGHV3OR16-12A0A075B7B8 117 aa16.53■□□□□ 0.24
LSM4-201ENST00000252816 PSG3Q16557 428 aa16.53■□□□□ 0.24
LSM4-201ENST00000252816 THAP6Q8TBB0 222 aa16.53■□□□□ 0.24
LSM4-201ENST00000252816 LRRC20Q8TCA0 184 aa16.53■□□□□ 0.24
LSM4-201ENST00000252816 NEU1Q99519 415 aa16.53■□□□□ 0.24
LSM4-201ENST00000252816 NPCDR1Q9BY65 106 aa16.53■□□□□ 0.24
LSM4-201ENST00000252816 H3BTX0 84 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 MPDU1O75352 247 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 DUSP14O95147 198 aaKnown RBP16.52■□□□□ 0.24
LSM4-201ENST00000252816 MPC2O95563 127 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 IGLC2P0DOY2 106 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 CXCL2P19875 107 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 CLINT1Q14677 625 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 LCN15Q6UWW0 184 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 C1orf158Q8N1D5 194 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 OR11H7Q8NGC8 314 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 PFDN5Q99471 154 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 ZNF331Q9NQX6 463 aaPredicted RBP16.52■□□□□ 0.24
LSM4-201ENST00000252816 CELA1Q9UNI1 258 aa16.52■□□□□ 0.24
LSM4-201ENST00000252816 HYDINQ4G0P3 5121 aa16.51■□□□□ 0.23
LSM4-201ENST00000252816 H3BQ15 152 aa16.51■□□□□ 0.23
LSM4-201ENST00000252816 SLC17A3O00476 420 aa16.51■□□□□ 0.23
LSM4-201ENST00000252816 OR8A1Q8NGG7 326 aa16.51■□□□□ 0.23
LSM4-201ENST00000252816 LINC00476Q8WZB0 136 aa16.51■□□□□ 0.23
LSM4-201ENST00000252816 ALG5Q9Y673 324 aa16.51■□□□□ 0.23
LSM4-201ENST00000252816 GCSAMLQ5JQS6 135 aa16.5■□□□□ 0.23
LSM4-201ENST00000252816 SLC50A1Q9BRV3 221 aa16.5■□□□□ 0.23
LSM4-201ENST00000252816 M0R2Z0 102 aa16.49■□□□□ 0.23
LSM4-201ENST00000252816 PTTG1O95997 202 aa16.49■□□□□ 0.23
LSM4-201ENST00000252816 HIST1H1AQ02539 215 aaPredicted RBP16.49■□□□□ 0.23
LSM4-201ENST00000252816 SPINK13Q1W4C9 94 aa16.49■□□□□ 0.23
LSM4-201ENST00000252816 RPUSD4Q96CM3 377 aaKnown RBP16.49■□□□□ 0.23
LSM4-201ENST00000252816 SAT2Q96F10 170 aaPredicted RBP16.49■□□□□ 0.23
LSM4-201ENST00000252816 IGF2BP2-AS1Q96M15 143 aa16.49■□□□□ 0.23
LSM4-201ENST00000252816 GOLT1BQ9Y3E0 138 aa16.49■□□□□ 0.23
LSM4-201ENST00000252816 SMIM9A6NGZ8 99 aa16.48■□□□□ 0.23
LSM4-201ENST00000252816 CRXO43186 299 aaPredicted RBP16.48■□□□□ 0.23
LSM4-201ENST00000252816 Q6ZTC4 211 aa16.48■□□□□ 0.23
LSM4-201ENST00000252816 MBD2Q9UBB5 411 aa16.48■□□□□ 0.23
LSM4-201ENST00000252816 C12orf74Q32Q52 190 aa16.47■□□□□ 0.23
LSM4-201ENST00000252816 ZNF767PQ75MW2 155 aa16.47■□□□□ 0.23
LSM4-201ENST00000252816 WDR61Q9GZS3 305 aaKnown RBP16.47■□□□□ 0.23
LSM4-201ENST00000252816 ZNF586Q9NXT0 402 aa16.47■□□□□ 0.23
LSM4-201ENST00000252816 HSPB11Q9Y547 144 aa16.47■□□□□ 0.23
LSM4-201ENST00000252816 LY6G6CO95867 125 aa16.46■□□□□ 0.23
LSM4-201ENST00000252816 AMBPP02760 352 aa16.46■□□□□ 0.23
LSM4-201ENST00000252816 PET100P0DJ07 73 aa16.46■□□□□ 0.23
LSM4-201ENST00000252816 EMP1P54849 157 aa16.46■□□□□ 0.23
LSM4-201ENST00000252816 C2CD4CQ8TF44 421 aa16.46■□□□□ 0.23
LSM4-201ENST00000252816 RFNGQ9Y644 331 aa16.46■□□□□ 0.23
LSM4-201ENST00000252816 C11orf94C9JXX5 98 aa16.45■□□□□ 0.22
LSM4-201ENST00000252816 PRAC2D3DTV9 90 aa16.45■□□□□ 0.22
LSM4-201ENST00000252816 BOLA2-SMG1P6H3BVE0 249 aa16.45■□□□□ 0.22
LSM4-201ENST00000252816 RHOBP62745 196 aa16.45■□□□□ 0.22
LSM4-201ENST00000252816 BAP18Q8IXM2 172 aa16.45■□□□□ 0.22
LSM4-201ENST00000252816 TRAV12-2A0A075B6T6 113 aa16.44■□□□□ 0.22
LSM4-201ENST00000252816 RPL12P30050 165 aaKnown RBP16.44■□□□□ 0.22
LSM4-201ENST00000252816 GUK1Q16774 197 aa16.44■□□□□ 0.22
LSM4-201ENST00000252816 ATP5SQ99766 215 aa16.44■□□□□ 0.22
LSM4-201ENST00000252816 TMEM14CQ9P0S9 112 aa16.44■□□□□ 0.22
LSM4-201ENST00000252816 TMEM189A5PLL7 270 aa16.43■□□□□ 0.22
LSM4-201ENST00000252816 INSP01308 110 aa16.43■□□□□ 0.22
LSM4-201ENST00000252816 HBE1P02100 147 aa16.43■□□□□ 0.22
LSM4-201ENST00000252816 PRM2P04554 102 aa16.43■□□□□ 0.22
LSM4-201ENST00000252816 PYYP10082 97 aa16.43■□□□□ 0.22
LSM4-201ENST00000252816 TMEM208Q9BTX3 173 aa16.43■□□□□ 0.22
LSM4-201ENST00000252816 SMIM3Q9BZL3 60 aa16.43■□□□□ 0.22
LSM4-201ENST00000252816 TRBV19A0A075B6N1 114 aa16.42■□□□□ 0.22
LSM4-201ENST00000252816 TRAV10A0A0B4J240 114 aa16.42■□□□□ 0.22
LSM4-201ENST00000252816 LOC102723971A0A1B0GUV8 181 aa16.42■□□□□ 0.22
LSM4-201ENST00000252816 FCN2Q15485 313 aa16.42■□□□□ 0.22
LSM4-201ENST00000252816 RRN3P1Q2M238 152 aa16.42■□□□□ 0.22
LSM4-201ENST00000252816 MIR17HGQ75NE6 70 aa16.42■□□□□ 0.22
LSM4-201ENST00000252816 FAM167A-AS1Q96KT0 104 aa16.42■□□□□ 0.22
LSM4-201ENST00000252816 SLC25A2Q9BXI2 301 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms