RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 WFDC3Q8IUB2 231 aa13.51□□□□□ -0.25
CLN3-259ENST00000637551 THAP6Q8TBB0 222 aa13.51□□□□□ -0.25
CLN3-259ENST00000637551 CLUHP3Q96NS8 147 aa13.51□□□□□ -0.25
CLN3-259ENST00000637551 PARD6GQ9BYG4 376 aaPredicted RBP13.51□□□□□ -0.25
CLN3-259ENST00000637551 ARV1Q9H2C2 271 aa13.51□□□□□ -0.25
CLN3-259ENST00000637551 A0A087X0K7 114 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 UBE2L5PA0A1B0GUS4 154 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 SOCS3O14543 225 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 CXCL3P19876 107 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 MORN3Q6PF18 240 aaPredicted RBP13.5□□□□□ -0.25
CLN3-259ENST00000637551 OR11H7Q8NGC8 314 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 ARL6Q9H0F7 186 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 MBD2Q9UBB5 411 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 HSPB11Q9Y547 144 aa13.5□□□□□ -0.25
CLN3-259ENST00000637551 OR5G3P0C626 314 aa13.49□□□□□ -0.25
CLN3-259ENST00000637551 SPP1P10451 314 aa13.49□□□□□ -0.25
CLN3-259ENST00000637551 NHLH2Q02577 135 aa13.49□□□□□ -0.25
CLN3-259ENST00000637551 GATAD1Q8WUU5 269 aa13.49□□□□□ -0.25
CLN3-259ENST00000637551 ATP5SQ99766 215 aa13.49□□□□□ -0.25
CLN3-259ENST00000637551 NPCDR1Q9BY65 106 aa13.49□□□□□ -0.25
CLN3-259ENST00000637551 SLC25A32Q9H2D1 315 aa13.49□□□□□ -0.25
CLN3-259ENST00000637551 COX7A2P2O60397 106 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 ZNF688P0C7X2 276 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 RPL12P30050 165 aaKnown RBP13.48□□□□□ -0.25
CLN3-259ENST00000637551 B2MP61769 119 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 FCN2Q15485 313 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 APRG1Q8IVJ8 170 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 STHQ8IWL8 128 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 FAM24BQ8N5W8 94 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 CSTL1Q9H114 145 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 DNAJC4Q9NNZ3 241 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 SLC39A9Q9NUM3 307 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 CLEC5AQ9NY25 188 aa13.48□□□□□ -0.25
CLN3-259ENST00000637551 DYNC2H1Q8NCM8 4307 aaKnown RBP13.48□□□□□ -0.25
CLN3-259ENST00000637551 FGF7P21781 194 aa13.47□□□□□ -0.25
CLN3-259ENST00000637551 C10orf113Q5VZT2 155 aa13.47□□□□□ -0.25
CLN3-259ENST00000637551 PATE2Q6UY27 113 aa13.47□□□□□ -0.25
CLN3-259ENST00000637551 LINC00305Q7Z4B0 112 aa13.47□□□□□ -0.25
CLN3-259ENST00000637551 TRPT1Q86TN4 253 aaKnown RBP13.47□□□□□ -0.25
CLN3-259ENST00000637551 BPIFA4PQ86YQ2 179 aa13.47□□□□□ -0.25
CLN3-259ENST00000637551 SCRT1Q9BWW7 348 aa13.47□□□□□ -0.25
CLN3-259ENST00000637551 WDR61Q9GZS3 305 aaKnown RBP13.47□□□□□ -0.25
CLN3-259ENST00000637551 SLC25A22Q9H936 323 aa13.47□□□□□ -0.25
CLN3-259ENST00000637551 C17orf112F2Z3M2 114 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 ATF4P18848 351 aaPredicted RBP13.46□□□□□ -0.25
CLN3-259ENST00000637551 NUTF2P61970 127 aaKnown RBP13.46□□□□□ -0.25
CLN3-259ENST00000637551 PSMG4Q5JS54 123 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 FOXI2Q6ZQN5 318 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 ZNF709Q8N972 641 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 TMEM37Q8WXS4 190 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 AQP10Q96PS8 301 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 KRTAP17-1Q9BYP8 105 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 DOK5Q9P104 306 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 PXMP4Q9Y6I8 212 aa13.46□□□□□ -0.25
CLN3-259ENST00000637551 HUWE1Q7Z6Z7 4374 aaKnown RBP13.46□□□□□ -0.26
CLN3-259ENST00000637551 HLA-DRB4P13762 266 aa13.45□□□□□ -0.26
CLN3-259ENST00000637551 GUK1Q16774 197 aa13.45□□□□□ -0.26
CLN3-259ENST00000637551 LCN15Q6UWW0 184 aa13.45□□□□□ -0.26
CLN3-259ENST00000637551 RNF183Q96D59 192 aa13.45□□□□□ -0.26
CLN3-259ENST00000637551 HLA-DRB4X5D2U9 266 aa13.45□□□□□ -0.26
CLN3-259ENST00000637551 AGRNO00468 2067 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 MRPS12O15235 138 aaKnown RBP13.44□□□□□ -0.26
CLN3-259ENST00000637551 ZNF253O75346 499 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 IFNA5P01569 189 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 ZNF266Q14584 549 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 MIC13Q5XKP0 118 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 LEMD1Q68G75 181 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 UHRF2Q96PU4 802 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 SLC50A1Q9BRV3 221 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 RSG1Q9BU20 258 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 C1QTNF4Q9BXJ3 329 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 EDA2RQ9HAV5 297 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 RPRMQ9NS64 109 aa13.44□□□□□ -0.26
CLN3-259ENST00000637551 SPRY2O43597 315 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 CLINT1Q14677 625 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 C16orf92Q96LL3 132 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 OVOL2Q9BRP0 275 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 MRPL32Q9BYC8 188 aaKnown RBP13.43□□□□□ -0.26
CLN3-259ENST00000637551 HRH4Q9H3N8 390 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 SAV1Q9H4B6 383 aaPredicted RBP13.43□□□□□ -0.26
CLN3-259ENST00000637551 TMEM14CQ9P0S9 112 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 SACSQ9NZJ4 4579 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 TENM2Q9NT68 2774 aa13.43□□□□□ -0.26
CLN3-259ENST00000637551 A8MTW9 85 aa13.42□□□□□ -0.26
CLN3-259ENST00000637551 H3BMM0 161 aa13.42□□□□□ -0.26
CLN3-259ENST00000637551 IL17DQ8TAD2 202 aa13.42□□□□□ -0.26
CLN3-259ENST00000637551 C17orf77Q96MU5 243 aa13.42□□□□□ -0.26
CLN3-259ENST00000637551 RPL35AP18077 110 aaKnown RBP13.41□□□□□ -0.26
CLN3-259ENST00000637551 PDE6HQ13956 83 aa13.41□□□□□ -0.26
CLN3-259ENST00000637551 ZNF124Q15973 351 aa13.41□□□□□ -0.26
CLN3-259ENST00000637551 ACTL10Q5JWF8 245 aa13.41□□□□□ -0.26
CLN3-259ENST00000637551 SCGB1C1Q8TD33 95 aa13.41□□□□□ -0.26
CLN3-259ENST00000637551 TIMM9Q9Y5J7 89 aa13.41□□□□□ -0.26
CLN3-259ENST00000637551 C3orf84H3BNL1 204 aa13.4□□□□□ -0.26
CLN3-259ENST00000637551 IGLC2P0DOY2 106 aa13.4□□□□□ -0.26
CLN3-259ENST00000637551 EBLN2Q6P2I7 272 aa13.4□□□□□ -0.26
CLN3-259ENST00000637551 INO80EQ8NBZ0 244 aaPredicted RBP13.4□□□□□ -0.26
CLN3-259ENST00000637551 OR2T35Q8NGX2 323 aa13.4□□□□□ -0.26
CLN3-259ENST00000637551 CA1P00915 261 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms