RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 GALR1P47211 349 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 C10orf113Q5VZT2 155 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 OR1L4Q8NGR5 311 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 CHAC2Q8WUX2 184 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 AQP10Q96PS8 301 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 EDA2RQ9HAV5 297 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 NRN1Q9NPD7 142 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 RNF24Q9Y225 148 aa13.47□□□□□ -0.25
CLN3-243ENST00000635973 ELOA3CA0A087WX78 387 aaPredicted RBP13.46□□□□□ -0.25
CLN3-243ENST00000635973 C17orf112F2Z3M2 114 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 PRR20EP86478 221 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 PRR20CP86479 221 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 PRR20DP86480 221 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 PRR20BP86481 221 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 PRR20AP86496 221 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 LINC00305Q7Z4B0 112 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 DCANP1Q8TF63 244 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 GPR82Q96P67 336 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 PFDN5Q99471 154 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 FAM110AQ9BQ89 295 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 MAP6D1Q9H9H5 199 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 DNAH7Q8WXX0 4024 aa13.46□□□□□ -0.25
CLN3-243ENST00000635973 SMLR1H3BR10 107 aa13.45□□□□□ -0.26
CLN3-243ENST00000635973 K7EQG2 157 aa13.45□□□□□ -0.26
CLN3-243ENST00000635973 ZNF688P0C7X2 276 aa13.45□□□□□ -0.26
CLN3-243ENST00000635973 PATE2Q6UY27 113 aa13.45□□□□□ -0.26
CLN3-243ENST00000635973 APRG1Q8IVJ8 170 aa13.45□□□□□ -0.26
CLN3-243ENST00000635973 FAM24BQ8N5W8 94 aa13.45□□□□□ -0.26
CLN3-243ENST00000635973 DNAJC4Q9NNZ3 241 aa13.45□□□□□ -0.26
CLN3-243ENST00000635973 RPL7P18124 248 aaKnown RBP13.44□□□□□ -0.26
CLN3-243ENST00000635973 ATF4P18848 351 aaPredicted RBP13.44□□□□□ -0.26
CLN3-243ENST00000635973 DEFB131AP59861 70 aa13.44□□□□□ -0.26
CLN3-243ENST00000635973 SNRPD3P62318 126 aaKnown RBP13.44□□□□□ -0.26
CLN3-243ENST00000635973 Q6ZNX1 250 aa13.44□□□□□ -0.26
CLN3-243ENST00000635973 WFDC1Q9HC57 220 aa13.44□□□□□ -0.26
CLN3-243ENST00000635973 hCG_2014768A0A024R1R8 64 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 ZNF266Q14584 549 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 IL17DQ8TAD2 202 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 TMEM37Q8WXS4 190 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 RSG1Q9BU20 258 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 RETNQ9HD89 108 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 TNFSF18Q9UNG2 199 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 TENM2Q9NT68 2774 aa13.43□□□□□ -0.26
CLN3-243ENST00000635973 SACSQ9NZJ4 4579 aa13.42□□□□□ -0.26
CLN3-243ENST00000635973 RBMY1BA6NDE4 496 aaKnown RBP13.42□□□□□ -0.26
CLN3-243ENST00000635973 RBMY1EA6NEQ0 496 aaKnown RBP13.42□□□□□ -0.26
CLN3-243ENST00000635973 ARPC5O15511 151 aa13.42□□□□□ -0.26
CLN3-243ENST00000635973 RBMY1DP0C7P1 496 aaKnown RBP13.42□□□□□ -0.26
CLN3-243ENST00000635973 ID1P41134 155 aa13.42□□□□□ -0.26
CLN3-243ENST00000635973 MEOX2P50222 304 aa13.42□□□□□ -0.26
CLN3-243ENST00000635973 ZNF124Q15973 351 aa13.42□□□□□ -0.26
CLN3-243ENST00000635973 PSMG4Q5JS54 123 aa13.42□□□□□ -0.26
CLN3-243ENST00000635973 SAMD13Q5VXD3 122 aa13.42□□□□□ -0.26
CLN3-243ENST00000635973 LOC102724200A0A096LPH7 203 aaPredicted RBP13.41□□□□□ -0.26
CLN3-243ENST00000635973 LCE6AA0A183 80 aa13.41□□□□□ -0.26
CLN3-243ENST00000635973 RNF222A6NCQ9 220 aa13.41□□□□□ -0.26
CLN3-243ENST00000635973 G3V3Q6 166 aa13.41□□□□□ -0.26
CLN3-243ENST00000635973 LINC00322Q6ZN03 302 aaPredicted RBP13.41□□□□□ -0.26
CLN3-243ENST00000635973 GATAD1Q8WUU5 269 aa13.41□□□□□ -0.26
CLN3-243ENST00000635973 C16orf92Q96LL3 132 aa13.41□□□□□ -0.26
CLN3-243ENST00000635973 PARD6GQ9BYG4 376 aaPredicted RBP13.41□□□□□ -0.26
CLN3-243ENST00000635973 RPL35AP18077 110 aaKnown RBP13.4□□□□□ -0.26
CLN3-243ENST00000635973 PSMB3P49720 205 aa13.4□□□□□ -0.26
CLN3-243ENST00000635973 GCSAMLQ5JQS6 135 aa13.4□□□□□ -0.26
CLN3-243ENST00000635973 FFAR4Q5NUL3 377 aa13.4□□□□□ -0.26
CLN3-243ENST00000635973 BPIFA4PQ86YQ2 179 aa13.4□□□□□ -0.26
CLN3-243ENST00000635973 LINC00052Q96N35 136 aa13.4□□□□□ -0.26
CLN3-243ENST00000635973 FAM78BQ5VT40 261 aa13.39□□□□□ -0.27
CLN3-243ENST00000635973 MORN5Q5VZ52 161 aa13.39□□□□□ -0.27
CLN3-243ENST00000635973 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.39□□□□□ -0.27
CLN3-243ENST00000635973 STHQ8IWL8 128 aa13.39□□□□□ -0.27
CLN3-243ENST00000635973 HSD17B11Q8NBQ5 300 aa13.39□□□□□ -0.27
CLN3-243ENST00000635973 LRRC20Q8TCA0 184 aa13.39□□□□□ -0.27
CLN3-243ENST00000635973 MFFQ9GZY8 342 aa13.39□□□□□ -0.27
CLN3-243ENST00000635973 SEPSECSQ9HD40 501 aaKnown RBP13.39□□□□□ -0.27
CLN3-243ENST00000635973 BORCS7-ASMTA0A0B4J1R7 106 aa13.38□□□□□ -0.27
CLN3-243ENST00000635973 TRAV5A0A0B4J249 113 aa13.38□□□□□ -0.27
CLN3-243ENST00000635973 ISLRO14498 428 aa13.38□□□□□ -0.27
CLN3-243ENST00000635973 APOC4P55056 127 aa13.38□□□□□ -0.27
CLN3-243ENST00000635973 EPPK1P58107 5090 aaKnown RBP13.37□□□□□ -0.27
CLN3-243ENST00000635973 A0A087X0K7 114 aa13.37□□□□□ -0.27
CLN3-243ENST00000635973 KNCNA6PVL3 124 aa13.37□□□□□ -0.27
CLN3-243ENST00000635973 SOCS3O14543 225 aa13.37□□□□□ -0.27
CLN3-243ENST00000635973 ACTL10Q5JWF8 245 aa13.37□□□□□ -0.27
CLN3-243ENST00000635973 MRPL32Q9BYC8 188 aaKnown RBP13.37□□□□□ -0.27
CLN3-243ENST00000635973 TIMM9Q9Y5J7 89 aa13.37□□□□□ -0.27
CLN3-243ENST00000635973 ACOT6Q3I5F7 207 aaPredicted RBP13.36□□□□□ -0.27
CLN3-243ENST00000635973 TAAR5O14804 337 aa13.35□□□□□ -0.27
CLN3-243ENST00000635973 JTBO76095 146 aa13.35□□□□□ -0.27
CLN3-243ENST00000635973 SNRPCP09234 159 aaKnown RBP13.35□□□□□ -0.27
CLN3-243ENST00000635973 SPATA31B1PQ5VZV4 182 aa13.35□□□□□ -0.27
CLN3-243ENST00000635973 RPL7L1Q6DKI1 246 aaKnown RBP13.35□□□□□ -0.27
CLN3-243ENST00000635973 LCN15Q6UWW0 184 aa13.35□□□□□ -0.27
CLN3-243ENST00000635973 ST6GAL2Q96JF0 529 aa13.35□□□□□ -0.27
CLN3-243ENST00000635973 FUT9Q9Y231 359 aa13.35□□□□□ -0.27
CLN3-243ENST00000635973 DNAH1Q9P2D7 4330 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 HMSDA8MTL9 139 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 MRPS12O15235 138 aaKnown RBP13.34□□□□□ -0.27
CLN3-243ENST00000635973 CXCL2P19875 107 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 ATP6V0CP27449 155 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms