RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 HLA-DRB4X5D2U9 266 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 TENM2Q9NT68 2774 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 E5RGE8 158 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 H3BMM0 161 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 MRPS12O15235 138 aaKnown RBP11.78□□□□□ -0.52
TRIM28-213ENST00000598355 ACTL10Q5JWF8 245 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 TMEM217Q8N7C4 229 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 PPP1R1CQ8WVI7 109 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 CLUHP3Q96NS8 147 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 UHRF2Q96PU4 802 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 ARV1Q9H2C2 271 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 OR5AC2Q9NZP5 309 aa11.78□□□□□ -0.52
TRIM28-213ENST00000598355 A0A087X0K7 114 aa11.77□□□□□ -0.53
TRIM28-213ENST00000598355 OPCMLQ14982 345 aa11.77□□□□□ -0.53
TRIM28-213ENST00000598355 ATP6V1FQ16864 119 aa11.77□□□□□ -0.53
TRIM28-213ENST00000598355 CSNK1G2-AS1Q8NCQ2 148 aa11.77□□□□□ -0.53
TRIM28-213ENST00000598355 ARL6Q9H0F7 186 aa11.77□□□□□ -0.53
TRIM28-213ENST00000598355 SAV1Q9H4B6 383 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-213ENST00000598355 LYSTQ99698 3801 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 A0A0J9YWU9 116 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 UBE2L5PA0A1B0GUS4 154 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 A8MTW9 85 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 SSNA1O43805 119 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 OR5G3P0C626 314 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 RPL7P18124 248 aaKnown RBP11.76□□□□□ -0.53
TRIM28-213ENST00000598355 ID1P41134 155 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 CAMLGP49069 296 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 EWSR1Q01844 656 aaKnown RBP eCLIP11.76□□□□□ -0.53
TRIM28-213ENST00000598355 BAXQ07812 192 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 LRRC37A5PQ49AS3 106 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 GDF5OSQ5U4N7 250 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 FOXI2Q6ZQN5 318 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 S100A7AQ86SG5 101 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 IL17DQ8TAD2 202 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 TMEM37Q8WXS4 190 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 C11orf68Q9H3H3 251 aaKnown RBP11.76□□□□□ -0.53
TRIM28-213ENST00000598355 RNF24Q9Y225 148 aa11.76□□□□□ -0.53
TRIM28-213ENST00000598355 DYNC2H1Q8NCM8 4307 aaKnown RBP11.75□□□□□ -0.53
TRIM28-213ENST00000598355 ELOA3CA0A087WX78 387 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-213ENST00000598355 ZNF705EA8MWA4 302 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-213ENST00000598355 MPDU1O75352 247 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 MPC2O95563 127 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 RLN2P04090 185 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 RPL29P47914 159 aaKnown RBP11.75□□□□□ -0.53
TRIM28-213ENST00000598355 SPATA31B1PQ5VZV4 182 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 C20orf173Q96LM9 149 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 RSG1Q9BU20 258 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 RNF126Q9BV68 326 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 ALG5Q9Y673 324 aa11.75□□□□□ -0.53
TRIM28-213ENST00000598355 TRAV8-2A0A0B4J237 113 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 PET100P0DJ07 73 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 DEFB1P60022 68 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 NHLH2Q02577 135 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 RAB31Q13636 194 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 MORN5Q5VZ52 161 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 MIC13Q5XKP0 118 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 LINC00305Q7Z4B0 112 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 RARRES2Q99969 163 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 SLC25A31Q9H0C2 315 aa11.74□□□□□ -0.53
TRIM28-213ENST00000598355 A0A0J9YX75 114 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 COX7A2P2O60397 106 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 CXCL2P19875 107 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 ZFAND6Q6FIF0 208 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 ZNF709Q8N972 641 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 Q8NAQ8 132 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 OR5C1Q8NGR4 320 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 OR11H2Q8NH07 326 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 C16orf92Q96LL3 132 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 SLC39A9Q9NUM3 307 aa11.73□□□□□ -0.53
TRIM28-213ENST00000598355 CXCL3P19876 107 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 FGF7P21781 194 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 B2MP61769 119 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 NUTF2P61970 127 aaKnown RBP11.72□□□□□ -0.53
TRIM28-213ENST00000598355 LINC00052Q96N35 136 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 PFDN5Q99471 154 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 NPCDR1Q9BY65 106 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 RPRMQ9NS64 109 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 X6R8D5 127 aa11.72□□□□□ -0.53
TRIM28-213ENST00000598355 C10orf113Q5VZT2 155 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 Q6ZRG5 221 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 OR1L4Q8NGR5 311 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 C1QTNF4Q9BXJ3 329 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 DNAJC4Q9NNZ3 241 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 MBD2Q9UBB5 411 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 HSPB11Q9Y547 144 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 PXMP4Q9Y6I8 212 aa11.71□□□□□ -0.53
TRIM28-213ENST00000598355 F6UB75 175 aa11.7□□□□□ -0.54
TRIM28-213ENST00000598355 IGLC2P0DOY2 106 aa11.7□□□□□ -0.54
TRIM28-213ENST00000598355 LCN15Q6UWW0 184 aa11.7□□□□□ -0.54
TRIM28-213ENST00000598355 AMTNQ6UX39 209 aa11.7□□□□□ -0.54
TRIM28-213ENST00000598355 BPIFA4PQ86YQ2 179 aa11.7□□□□□ -0.54
TRIM28-213ENST00000598355 OR11H7Q8NGC8 314 aa11.7□□□□□ -0.54
TRIM28-213ENST00000598355 WDR61Q9GZS3 305 aaKnown RBP11.7□□□□□ -0.54
TRIM28-213ENST00000598355 MIFP14174 115 aa11.69□□□□□ -0.54
TRIM28-213ENST00000598355 ZNF705AQ6ZN79 300 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-213ENST00000598355 RNF182Q8N6D2 247 aa11.69□□□□□ -0.54
TRIM28-213ENST00000598355 THAP6Q8TBB0 222 aa11.69□□□□□ -0.54
TRIM28-213ENST00000598355 ZNF331Q9NQX6 463 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-213ENST00000598355 ZNF705FA8MVS1 300 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms