RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SYNJ2BPP57105 145 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 CCL20P78556 96 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 GUK1Q16774 197 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 NSUN5P1Q3KNT7 163 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 C18orf65Q6ZTR6 163 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 COMMD7Q86VX2 200 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 EIF5A2Q9GZV4 153 aaKnown RBP11.67□□□□□ -0.54
TRIM28-209ENST00000597423 SMDT1Q9H4I9 107 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 NF1P21359 2839 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 IGHV7-4-1A0A0J9YVY3 117 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 RBFOX3A6NFN3 312 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 CD5P06127 495 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 MEOX2P50222 304 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 UBE2L3P68036 154 aaKnown RBP11.66□□□□□ -0.54
TRIM28-209ENST00000597423 DEFB136Q30KP8 78 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 MORN5Q5VZ52 161 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 LEMD1Q68G75 181 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 UQCC3Q6UW78 93 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 SUN5Q8TC36 379 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 ZNF414Q96IQ9 312 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 RAX2Q96IS3 184 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 TXNDC17Q9BRA2 123 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 NKX6-2Q9C056 277 aaPredicted RBP11.66□□□□□ -0.54
TRIM28-209ENST00000597423 SMPXQ9UHP9 88 aa11.66□□□□□ -0.54
TRIM28-209ENST00000597423 NIPBLQ6KC79 2804 aaeCLIP11.66□□□□□ -0.54
TRIM28-209ENST00000597423 HELTA6NFD8 242 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 ZNF785A8K8V0 405 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 A8MWP6 167 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 EIF3GO75821 320 aaKnown RBP eCLIP11.65□□□□□ -0.54
TRIM28-209ENST00000597423 NBEAP1P0C6P0 100 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 ATF4P18848 351 aaPredicted RBP11.65□□□□□ -0.54
TRIM28-209ENST00000597423 TM4SF20Q53R12 229 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 FAM210AQ96ND0 272 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 TMPRSS5Q9H3S3 457 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 VAX2Q9UIW0 290 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 ARL2-SNX15V9GYD0 113 aa11.65□□□□□ -0.54
TRIM28-209ENST00000597423 OR10J4P0C629 311 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 SLURP1P55000 103 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 FHL3Q13643 280 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 HAGHQ16775 308 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 KRTAP24-1Q3LI83 254 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 C16orf54Q6UWD8 224 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 PRIMA1Q86XR5 153 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 EIF4E3Q8N5X7 224 aaKnown RBP11.64□□□□□ -0.55
TRIM28-209ENST00000597423 FXYD5Q96DB9 178 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 RHPN1-AS1Q9BWJ2 59 aa11.64□□□□□ -0.55
TRIM28-209ENST00000597423 A0A1W2PRE2 83 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 CHEK1O14757 476 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 PAGE4O60829 102 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 PYYP10082 97 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 BCL2P10415 239 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 GP9P14770 177 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 KRTAP10-3P60369 221 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 CST9LP1Q5W188 147 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 OR9G4Q8NGQ1 327 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 ZNF503Q96F45 646 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 DUX3Q96PT4 197 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 CITED1Q99966 193 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 C2CD3Q4AC94 2353 aa11.63□□□□□ -0.55
TRIM28-209ENST00000597423 IGHV3-49A0A0A0MS15 119 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 IGHV3-66A0A0C4DH42 116 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 C2orf70A6NJV1 201 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 NDUFS6O75380 124 aaKnown RBP11.62□□□□□ -0.55
TRIM28-209ENST00000597423 APOHP02749 345 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-209ENST00000597423 CBLN1P23435 193 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 PSG9Q00887 426 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 PDE6HQ13956 83 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 ZNF506Q5JVG8 444 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 SAMD13Q5VXD3 122 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 C12orf54Q6X4T0 127 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 SIGLEC15Q6ZMC9 328 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 LYPD1Q8N2G4 141 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 C3orf56Q8N813 242 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 BLNKQ8WV28 456 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 DLX4Q92988 240 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-209ENST00000597423 TREM1Q9NP99 234 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 JMJD1CQ15652 2540 aa11.62□□□□□ -0.55
TRIM28-209ENST00000597423 IGHV3OR16-13A0A075B7E8 117 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 IGHV3-74A0A0B4J1X5 117 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 LOC102723971A0A1B0GUV8 181 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 TMEM213A2RRL7 107 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 ADARB2-AS1A8MUL3 147 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 OVOL1O14753 267 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 PF4P02776 101 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 IGLC2P0DOY2 106 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 FOLR2P14207 255 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 UBE2G2P60604 165 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 RPL11P62913 178 aaKnown RBP11.61□□□□□ -0.55
TRIM28-209ENST00000597423 TOR2AQ5JU69 321 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 SLC7A5P1Q8MH63 180 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 ZNF747Q9BV97 191 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 CLEC5AQ9NY25 188 aa11.61□□□□□ -0.55
TRIM28-209ENST00000597423 TRBV19A0A075B6N1 114 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 A0A087X0K7 114 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 FAM74A7A6NL05 159 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 C11orf94C9JXX5 98 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 PDE6DO43924 150 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 ZNF253O75346 499 aa11.6□□□□□ -0.55
TRIM28-209ENST00000597423 RANP62826 216 aaKnown RBP11.6□□□□□ -0.55
TRIM28-209ENST00000597423 MEF2BQ02080 365 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms