RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CST7O76096 145 aa17.38■□□□□ 0.37
SHMT1-206ENST00000579558 S100A7AQ86SG5 101 aa17.38■□□□□ 0.37
SHMT1-206ENST00000579558 C1QTNF4Q9BXJ3 329 aa17.38■□□□□ 0.37
SHMT1-206ENST00000579558 INMT-MINDY4F8WBC2 141 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 AGPAT2O15120 278 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 PRAF2O60831 178 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 IGKV3-20P01619 116 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 DEFA1P59665 94 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 DEFA3P59666 94 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 UHRF2Q96PU4 802 aa17.37■□□□□ 0.37
SHMT1-206ENST00000579558 LYRM2Q9NU23 88 aaPredicted RBP17.37■□□□□ 0.37
SHMT1-206ENST00000579558 Q8NAQ8 132 aa17.36■□□□□ 0.37
SHMT1-206ENST00000579558 CSNK1G2-AS1Q8NCQ2 148 aa17.36■□□□□ 0.37
SHMT1-206ENST00000579558 C17orf77Q96MU5 243 aa17.36■□□□□ 0.37
SHMT1-206ENST00000579558 MGST2Q99735 147 aa17.36■□□□□ 0.37
SHMT1-206ENST00000579558 RPRMQ9NS64 109 aa17.36■□□□□ 0.37
SHMT1-206ENST00000579558 XCL2Q9UBD3 114 aa17.36■□□□□ 0.37
SHMT1-206ENST00000579558 DNAH1Q9P2D7 4330 aa17.36■□□□□ 0.37
SHMT1-206ENST00000579558 ZNF705EA8MWA4 302 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-206ENST00000579558 RPL7P18124 248 aaKnown RBP17.35■□□□□ 0.37
SHMT1-206ENST00000579558 PXDC1Q5TGL8 231 aa17.35■□□□□ 0.37
SHMT1-206ENST00000579558 EBLN2Q6P2I7 272 aa17.35■□□□□ 0.37
SHMT1-206ENST00000579558 CEMP1Q6PRD7 247 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-206ENST00000579558 PATE2Q6UY27 113 aa17.35■□□□□ 0.37
SHMT1-206ENST00000579558 C11orf45Q8TAV5 145 aa17.35■□□□□ 0.37
SHMT1-206ENST00000579558 C20orf173Q96LM9 149 aa17.35■□□□□ 0.37
SHMT1-206ENST00000579558 ARV1Q9H2C2 271 aa17.35■□□□□ 0.37
SHMT1-206ENST00000579558 LYSTQ99698 3801 aa17.35■□□□□ 0.37
SHMT1-206ENST00000579558 IGHV4-28A0A0C4DH34 117 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 IGSF23A1L1A6 192 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 SIX6O95475 246 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 MIFP14174 115 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 SULT1A1P50225 295 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 FGL1Q08830 312 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 SPATA31B1PQ5VZV4 182 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 STX12Q86Y82 276 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 TMEM252Q8N6L7 170 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 OR4B1Q8NGF8 309 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 UQCC1Q9NVA1 299 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 X6R8D5 127 aa17.34■□□□□ 0.37
SHMT1-206ENST00000579558 F6UB75 175 aa17.33■□□□□ 0.36
SHMT1-206ENST00000579558 NANOS2P60321 138 aaKnown RBP17.33■□□□□ 0.36
SHMT1-206ENST00000579558 RAB31Q13636 194 aa17.33■□□□□ 0.36
SHMT1-206ENST00000579558 MARVELD1Q9BSK0 173 aa17.33■□□□□ 0.36
SHMT1-206ENST00000579558 MFFQ9GZY8 342 aa17.33■□□□□ 0.36
SHMT1-206ENST00000579558 RNF24Q9Y225 148 aa17.33■□□□□ 0.36
SHMT1-206ENST00000579558 RBMY1A1P0DJD3 496 aaKnown RBP17.32■□□□□ 0.36
SHMT1-206ENST00000579558 RBMY1CP0DJD4 496 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 S100A11P31949 105 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 CAMLGP49069 296 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 FXYD7P58549 80 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 HBG1P69891 147 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 HBG2P69892 147 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 RBMY1FQ15415 496 aaKnown RBP17.32■□□□□ 0.36
SHMT1-206ENST00000579558 PHLDA1Q8WV24 401 aaPredicted RBP17.32■□□□□ 0.36
SHMT1-206ENST00000579558 CLUHP3Q96NS8 147 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 WDR83OSQ9Y284 106 aa17.32■□□□□ 0.36
SHMT1-206ENST00000579558 KLK5Q9Y337 293 aaPredicted RBP17.32■□□□□ 0.36
SHMT1-206ENST00000579558 A0A0J9YX75 114 aa17.31■□□□□ 0.36
SHMT1-206ENST00000579558 COX7A2P2O60397 106 aa17.31■□□□□ 0.36
SHMT1-206ENST00000579558 VWC2Q2TAL6 325 aa17.31■□□□□ 0.36
SHMT1-206ENST00000579558 FAM78BQ5VT40 261 aa17.31■□□□□ 0.36
SHMT1-206ENST00000579558 IGFL4Q6B9Z1 124 aa17.31■□□□□ 0.36
SHMT1-206ENST00000579558 LINC00305Q7Z4B0 112 aa17.31■□□□□ 0.36
SHMT1-206ENST00000579558 TRAV8-2A0A0B4J237 113 aa17.3■□□□□ 0.36
SHMT1-206ENST00000579558 UBE2L5PA0A1B0GUS4 154 aa17.3■□□□□ 0.36
SHMT1-206ENST00000579558 NMES1Q9C002 83 aa17.3■□□□□ 0.36
SHMT1-206ENST00000579558 A0A087X0K7 114 aa17.29■□□□□ 0.36
SHMT1-206ENST00000579558 RLN2P04090 185 aa17.29■□□□□ 0.36
SHMT1-206ENST00000579558 PSG9Q00887 426 aa17.29■□□□□ 0.36
SHMT1-206ENST00000579558 BAXQ07812 192 aa17.29■□□□□ 0.36
SHMT1-206ENST00000579558 RNF182Q8N6D2 247 aa17.29■□□□□ 0.36
SHMT1-206ENST00000579558 ZNF709Q8N972 641 aa17.29■□□□□ 0.36
SHMT1-206ENST00000579558 SLC35B3Q9H1N7 401 aa17.29■□□□□ 0.36
SHMT1-206ENST00000579558 ELOA3CA0A087WX78 387 aaPredicted RBP17.28■□□□□ 0.36
SHMT1-206ENST00000579558 CYCSP99999 105 aaKnown RBP17.28■□□□□ 0.36
SHMT1-206ENST00000579558 ATP6V1FQ16864 119 aa17.28■□□□□ 0.36
SHMT1-206ENST00000579558 LRRC37A5PQ49AS3 106 aa17.28■□□□□ 0.36
SHMT1-206ENST00000579558 C10orf113Q5VZT2 155 aa17.28■□□□□ 0.36
SHMT1-206ENST00000579558 MIC13Q5XKP0 118 aa17.28■□□□□ 0.36
SHMT1-206ENST00000579558 Q6ZRG5 221 aa17.28■□□□□ 0.36
SHMT1-206ENST00000579558 LRRC20Q8TCA0 184 aa17.28■□□□□ 0.36
SHMT1-206ENST00000579558 TMEM37Q8WXS4 190 aa17.28■□□□□ 0.36
SHMT1-206ENST00000579558 SSNA1O43805 119 aa17.27■□□□□ 0.36
SHMT1-206ENST00000579558 ZNF738Q8NE65 137 aa17.27■□□□□ 0.36
SHMT1-206ENST00000579558 PLECQ15149 4684 aaKnown RBP17.26■□□□□ 0.35
SHMT1-206ENST00000579558 EPPK1P58107 5090 aaKnown RBP17.26■□□□□ 0.35
SHMT1-206ENST00000579558 E5RGE8 158 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 MRPS12O15235 138 aaKnown RBP17.26■□□□□ 0.35
SHMT1-206ENST00000579558 FGF7P21781 194 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 PRR20EP86478 221 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 PRR20CP86479 221 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 PRR20DP86480 221 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 PRR20BP86481 221 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 PRR20AP86496 221 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 SLC25A31Q9H0C2 315 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 HRH4Q9H3N8 390 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 DNAJC4Q9NNZ3 241 aa17.26■□□□□ 0.35
SHMT1-206ENST00000579558 OR5AC2Q9NZP5 309 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms