RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 OPCMLQ14982 345 aa9.6□□□□□ -0.87
CLK3-224ENST00000568605 ZNF124Q15973 351 aa9.6□□□□□ -0.87
CLK3-224ENST00000568605 DEFB135Q30KP9 77 aa9.6□□□□□ -0.87
CLK3-224ENST00000568605 TMEM41BQ5BJD5 291 aa9.6□□□□□ -0.87
CLK3-224ENST00000568605 MBD2Q9UBB5 411 aa9.6□□□□□ -0.87
CLK3-224ENST00000568605 H0YIZ8 118 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 SPP1P10451 314 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 RPL29P47914 159 aaKnown RBP9.59□□□□□ -0.87
CLK3-224ENST00000568605 B2MP61769 119 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 NHLH2Q02577 135 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 FGL1Q08830 312 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 CLINT1Q14677 625 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 C10orf113Q5VZT2 155 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 MORN3Q6PF18 240 aaPredicted RBP9.59□□□□□ -0.87
CLK3-224ENST00000568605 LINC00305Q7Z4B0 112 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 C16orf92Q96LL3 132 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 UHRF2Q96PU4 802 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 CSTL1Q9H114 145 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 RETNQ9HD89 108 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 HSPB11Q9Y547 144 aa9.59□□□□□ -0.87
CLK3-224ENST00000568605 C17orf112F2Z3M2 114 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 SPRY2O43597 315 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 CXCL3P19876 107 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 RPL12P30050 165 aaKnown RBP9.58□□□□□ -0.88
CLK3-224ENST00000568605 NUTF2P61970 127 aaKnown RBP9.58□□□□□ -0.88
CLK3-224ENST00000568605 FCN2Q15485 313 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 ACTL10Q5JWF8 245 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 MIC13Q5XKP0 118 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 BPIFA4PQ86YQ2 179 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 ZNF709Q8N972 641 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 CHAC2Q8WUX2 184 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 ATP5SQ99766 215 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 NPCDR1Q9BY65 106 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 RPRMQ9NS64 109 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 SLC39A9Q9NUM3 307 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 PXMP4Q9Y6I8 212 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 NBEAL2Q6ZNJ1 2754 aa9.58□□□□□ -0.88
CLK3-224ENST00000568605 SOCS3O14543 225 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 CA1P00915 261 aaPredicted RBP9.57□□□□□ -0.88
CLK3-224ENST00000568605 GIPP09681 153 aaPredicted RBP9.57□□□□□ -0.88
CLK3-224ENST00000568605 PRR20EP86478 221 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 PRR20CP86479 221 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 PRR20DP86480 221 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 PRR20BP86481 221 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 PRR20AP86496 221 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 OXA1LQ15070 435 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 SPATA31B1PQ5VZV4 182 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 LCN15Q6UWW0 184 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 TRPT1Q86TN4 253 aaKnown RBP9.57□□□□□ -0.88
CLK3-224ENST00000568605 OR11H7Q8NGC8 314 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 GATAD1Q8WUU5 269 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 LINC00052Q96N35 136 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 RSG1Q9BU20 258 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 DNAJC4Q9NNZ3 241 aa9.57□□□□□ -0.88
CLK3-224ENST00000568605 A0A087X0K7 114 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 KNCNA6PVL3 124 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 IFNA5P01569 189 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 LYL1P12980 280 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 HLA-DRB4P13762 266 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 CXCL2P19875 107 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 PATE2Q6UY27 113 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 FOXI2Q6ZQN5 318 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 LRRC20Q8TCA0 184 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 RNF183Q96D59 192 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 OVOL2Q9BRP0 275 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 SLC50A1Q9BRV3 221 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 RNF126Q9BV68 326 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 C1QTNF4Q9BXJ3 329 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 WDR61Q9GZS3 305 aaKnown RBP9.56□□□□□ -0.88
CLK3-224ENST00000568605 HLA-DRB4X5D2U9 266 aa9.56□□□□□ -0.88
CLK3-224ENST00000568605 EBLN2Q6P2I7 272 aa9.55□□□□□ -0.88
CLK3-224ENST00000568605 MUC7Q8TAX7 377 aa9.55□□□□□ -0.88
CLK3-224ENST00000568605 SCGB1C1Q8TD33 95 aa9.55□□□□□ -0.88
CLK3-224ENST00000568605 TMEM37Q8WXS4 190 aa9.55□□□□□ -0.88
CLK3-224ENST00000568605 SAV1Q9H4B6 383 aaPredicted RBP9.55□□□□□ -0.88
CLK3-224ENST00000568605 EDA2RQ9HAV5 297 aa9.55□□□□□ -0.88
CLK3-224ENST00000568605 C3orf84H3BNL1 204 aa9.54□□□□□ -0.88
CLK3-224ENST00000568605 ZNF266Q14584 549 aa9.54□□□□□ -0.88
CLK3-224ENST00000568605 IL17DQ8TAD2 202 aa9.54□□□□□ -0.88
CLK3-224ENST00000568605 SMIM3Q9BZL3 60 aa9.54□□□□□ -0.88
CLK3-224ENST00000568605 H3BMM0 161 aa9.53□□□□□ -0.88
CLK3-224ENST00000568605 GUK1Q16774 197 aa9.53□□□□□ -0.88
CLK3-224ENST00000568605 INO80EQ8NBZ0 244 aaPredicted RBP9.53□□□□□ -0.88
CLK3-224ENST00000568605 MRPL32Q9BYC8 188 aaKnown RBP9.53□□□□□ -0.88
CLK3-224ENST00000568605 PARD6GQ9BYG4 376 aaPredicted RBP9.53□□□□□ -0.88
CLK3-224ENST00000568605 CLEC5AQ9NY25 188 aa9.53□□□□□ -0.88
CLK3-224ENST00000568605 DUSP14O95147 198 aaKnown RBP9.52□□□□□ -0.89
CLK3-224ENST00000568605 FAM78BQ5VT40 261 aa9.52□□□□□ -0.89
CLK3-224ENST00000568605 ZNF738Q8NE65 137 aa9.52□□□□□ -0.89
CLK3-224ENST00000568605 OR4B1Q8NGF8 309 aa9.52□□□□□ -0.89
CLK3-224ENST00000568605 OR2T35Q8NGX2 323 aa9.52□□□□□ -0.89
CLK3-224ENST00000568605 CLUHP3Q96NS8 147 aa9.52□□□□□ -0.89
CLK3-224ENST00000568605 AQP10Q96PS8 301 aa9.52□□□□□ -0.89
CLK3-224ENST00000568605 RARRES2Q99969 163 aa9.52□□□□□ -0.89
CLK3-224ENST00000568605 MRPS12O15235 138 aaKnown RBP9.51□□□□□ -0.89
CLK3-224ENST00000568605 C4BPBP20851 252 aa9.51□□□□□ -0.89
CLK3-224ENST00000568605 GDF5OSQ5U4N7 250 aa9.51□□□□□ -0.89
CLK3-224ENST00000568605 OR11H2Q8NH07 326 aa9.51□□□□□ -0.89
CLK3-224ENST00000568605 HRH4Q9H3N8 390 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 344.4 ms