RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	DCANP1	Q8TF63	244 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	GATAD1	Q8WUU5	269 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	PFDN5	Q99471	154 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	ARPC5L	Q9BPX5	153 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	SH3BGRL3	Q9H299	93 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	DNAH9	Q9NYC9	4486 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	TRAV2	A0A0B4J234	112 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	BCL2L11	O43521	198 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	TFPI2	P48307	235 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	SPATA31B1P	Q5VZV4	182 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	FAM24B	Q8N5W8	94 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	STXBP6	Q8NFX7	210 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	OR2G3	Q8NGZ4	309 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	HYLS1	Q96M11	299 aa		13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	PSMG3	Q9BT73	122 aa	Predicted RBP	13.43	□□□□□ -0.26
COMMD4-222	ENST00000568034	BORCS7-ASMT	A0A0B4J1R7	106 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	TRAV5	A0A0B4J249	113 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	OR4C46	A6NHA9	309 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034		K7EQG2	157 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	S100A7	P31151	101 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	CD81	P60033	236 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	RPL11	P62913	178 aa	Known RBP	13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	ODF3L2	Q3SX64	289 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	TMUB2	Q71RG4	321 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	WFDC10A	Q9H1F0	79 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	SEPSECS	Q9HD40	501 aa	Known RBP	13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	NRN1	Q9NPD7	142 aa		13.42	□□□□□ -0.26
COMMD4-222	ENST00000568034	SOCS3	O14543	225 aa		13.41	□□□□□ -0.26
COMMD4-222	ENST00000568034	JTB	O76095	146 aa		13.41	□□□□□ -0.26
COMMD4-222	ENST00000568034	S100A7A	Q86SG5	101 aa		13.41	□□□□□ -0.26
COMMD4-222	ENST00000568034	WFDC3	Q8IUB2	231 aa		13.41	□□□□□ -0.26
COMMD4-222	ENST00000568034	C9orf62	Q8N4C0	152 aa		13.41	□□□□□ -0.26
COMMD4-222	ENST00000568034	RPL7	P18124	248 aa	Known RBP	13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	RAB2A	P61019	212 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	PAFAH1B2	P68402	229 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	ZFP69	Q49AA0	526 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	FAM78B	Q5VT40	261 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	MIR17HG	Q75NE6	70 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	GTSCR1	Q86UQ5	136 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	FAM167A-AS1	Q96KT0	104 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	GPR82	Q96P67	336 aa		13.4	□□□□□ -0.26
COMMD4-222	ENST00000568034	KANTR	A0A1W2PQU2	76 aa		13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034	DNASE2	O00115	360 aa	Predicted RBP	13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034	PFDN1	O60925	122 aa		13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034	GALR1	P47211	349 aa		13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034	GNPNAT1	Q96EK6	184 aa	Predicted RBP	13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034	SLC25A2	Q9BXI2	301 aa		13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034	MAP6D1	Q9H9H5	199 aa		13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034	UBQLN2	Q9UHD9	624 aa		13.39	□□□□□ -0.27
COMMD4-222	ENST00000568034		A0A087X0K7	114 aa		13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	M6PR	P20645	277 aa		13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	SERF2	P84101	59 aa		13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	FAM110A	Q9BQ89	295 aa		13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	ZNF471	Q9BX82	626 aa	Predicted RBP	13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	MRPL32	Q9BYC8	188 aa	Known RBP	13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	RNF24	Q9Y225	148 aa		13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	FUT9	Q9Y231	359 aa		13.38	□□□□□ -0.27
COMMD4-222	ENST00000568034	EIF3G	O75821	320 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	IGLC2	P0DOY2	106 aa		13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	SPP1	P10451	314 aa		13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	ACOT6	Q3I5F7	207 aa	Predicted RBP	13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	BPIFA4P	Q86YQ2	179 aa		13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	DEFB125	Q8N687	156 aa		13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	MRAP	Q8TCY5	172 aa		13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	CITED4	Q96RK1	184 aa		13.37	□□□□□ -0.27
COMMD4-222	ENST00000568034	OR11H12	B2RN74	326 aa		13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	ZNF688	P0C7X2	276 aa		13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	NKX2-5	P52952	324 aa	Predicted RBP	13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	RPP25L	Q8N5L8	163 aa	Known RBP	13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	STOML3	Q8TAV4	291 aa		13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	ZNF503	Q96F45	646 aa		13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	PLA2G2E	Q9NZK7	142 aa		13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	TMEM14C	Q9P0S9	112 aa		13.36	□□□□□ -0.27
COMMD4-222	ENST00000568034	HUWE1	Q7Z6Z7	4374 aa	Known RBP	13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	TRAV8-2	A0A0B4J237	113 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034		A8MZ25	164 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034		H3BQ15	152 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	SNRPC	P09234	159 aa	Known RBP	13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	IGHV4-30-4	P0DP06	118 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	PYY	P10082	97 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	ATF4	P18848	351 aa	Predicted RBP	13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	MEOX2	P50222	304 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	DEFB131A	P59861	70 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	RHOB	P62745	196 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	ZNF124	Q15973	351 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	OR10G4	Q8NGN3	311 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	OR10G9	Q8NGN4	311 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	OR10G7	Q8NGN6	311 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	RPRM	Q9NS64	109 aa		13.35	□□□□□ -0.27
COMMD4-222	ENST00000568034	FAM122C	Q6P4D5	195 aa		13.34	□□□□□ -0.27
COMMD4-222	ENST00000568034	APRG1	Q8IVJ8	170 aa		13.34	□□□□□ -0.27
COMMD4-222	ENST00000568034	C20orf173	Q96LM9	149 aa		13.34	□□□□□ -0.27
COMMD4-222	ENST00000568034	HRH4	Q9H3N8	390 aa		13.34	□□□□□ -0.27
COMMD4-222	ENST00000568034	ZNF586	Q9NXT0	402 aa		13.34	□□□□□ -0.27
COMMD4-222	ENST00000568034		H3BTX0	84 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	SLC17A3	O00476	420 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	ISLR	O14498	428 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	MB	P02144	154 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	PSMB3	P49720	205 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms