RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 OR11H1Q8NG94 326 aa23.39■■□□□ 1.33
CTCF-203ENST00000566078 FXYD5Q96DB9 178 aa23.39■■□□□ 1.33
CTCF-203ENST00000566078 TREM1Q9NP99 234 aa23.39■■□□□ 1.33
CTCF-203ENST00000566078 TMEM14CQ9P0S9 112 aa23.39■■□□□ 1.33
CTCF-203ENST00000566078 IGHV3-49A0A0A0MS15 119 aa23.38■■□□□ 1.33
CTCF-203ENST00000566078 PAGE4O60829 102 aa23.38■■□□□ 1.33
CTCF-203ENST00000566078 ICAM4Q14773 271 aa23.38■■□□□ 1.33
CTCF-203ENST00000566078 BPIFA4PQ86YQ2 179 aa23.38■■□□□ 1.33
CTCF-203ENST00000566078 RNF24Q9Y225 148 aa23.38■■□□□ 1.33
CTCF-203ENST00000566078 APOHP02749 345 aaPredicted RBP23.37■■□□□ 1.33
CTCF-203ENST00000566078 ZP3P21754 424 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 PEA15Q15121 130 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 OR1N2Q8NGR9 330 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 SUN5Q8TC36 379 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 RXFP4Q8TDU9 374 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 DPF1Q92782 380 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 DUX3Q96PT4 197 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 IGHV3OR16-13A0A075B7E8 117 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 IGHV3-74A0A0B4J1X5 117 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 IGHV3-66A0A0C4DH42 116 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 SNRPCP09234 159 aaKnown RBP23.37■■□□□ 1.33
CTCF-203ENST00000566078 KRTAP10-3P60369 221 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 FOXL1Q12952 345 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 U3KQE9 123 aa23.37■■□□□ 1.33
CTCF-203ENST00000566078 BUB3O43684 328 aa23.36■■□□□ 1.33
CTCF-203ENST00000566078 CD5P06127 495 aa23.36■■□□□ 1.33
CTCF-203ENST00000566078 SLURP1P55000 103 aa23.36■■□□□ 1.33
CTCF-203ENST00000566078 OR8I2Q8N0Y5 310 aa23.36■■□□□ 1.33
CTCF-203ENST00000566078 DAZ1Q9NQZ3 744 aaKnown RBP23.36■■□□□ 1.33
CTCF-203ENST00000566078 VAX2Q9UIW0 290 aa23.36■■□□□ 1.33
CTCF-203ENST00000566078 SYNJ2BPP57105 145 aa23.35■■□□□ 1.33
CTCF-203ENST00000566078 TM4SF20Q53R12 229 aa23.35■■□□□ 1.33
CTCF-203ENST00000566078 REC114Q7Z4M0 266 aa23.35■■□□□ 1.33
CTCF-203ENST00000566078 NARS2Q96I59 477 aaKnown RBP23.35■■□□□ 1.33
CTCF-203ENST00000566078 UFC1Q9Y3C8 167 aa23.35■■□□□ 1.33
CTCF-203ENST00000566078 YTHDF2Q9Y5A9 579 aaKnown RBP23.35■■□□□ 1.33
CTCF-203ENST00000566078 TAGLN2P37802 199 aaKnown RBP23.34■■□□□ 1.33
CTCF-203ENST00000566078 C1QL4Q86Z23 238 aa23.34■■□□□ 1.33
CTCF-203ENST00000566078 OR4F17Q8NGA8 305 aa23.34■■□□□ 1.33
CTCF-203ENST00000566078 OR4F4Q96R69 305 aa23.34■■□□□ 1.33
CTCF-203ENST00000566078 MRPS12O15235 138 aaKnown RBP23.33■■□□□ 1.33
CTCF-203ENST00000566078 RPL7P18124 248 aaKnown RBP23.33■■□□□ 1.33
CTCF-203ENST00000566078 CST9LP1Q5W188 147 aa23.33■■□□□ 1.33
CTCF-203ENST00000566078 BLNKQ8WV28 456 aa23.33■■□□□ 1.33
CTCF-203ENST00000566078 FAM74A7A6NL05 159 aa23.33■■□□□ 1.32
CTCF-203ENST00000566078 C9JQL5 133 aa23.33■■□□□ 1.32
CTCF-203ENST00000566078 K7EMT4 169 aa23.33■■□□□ 1.32
CTCF-203ENST00000566078 MEF2BQ02080 365 aaPredicted RBP23.33■■□□□ 1.32
CTCF-203ENST00000566078 RAX2Q96IS3 184 aa23.33■■□□□ 1.32
CTCF-203ENST00000566078 H3BTX0 84 aa23.32■■□□□ 1.32
CTCF-203ENST00000566078 LGALS9O00182 355 aa23.32■■□□□ 1.32
CTCF-203ENST00000566078 NBEAP1P0C6P0 100 aa23.32■■□□□ 1.32
CTCF-203ENST00000566078 HIST1H1EP10412 219 aaKnown RBP23.32■■□□□ 1.32
CTCF-203ENST00000566078 C1orf194Q5T5A4 169 aa23.32■■□□□ 1.32
CTCF-203ENST00000566078 IGHV7-4-1A0A0J9YVY3 117 aa23.31■■□□□ 1.32
CTCF-203ENST00000566078 A8MWP6 167 aa23.31■■□□□ 1.32
CTCF-203ENST00000566078 H3BQ15 152 aa23.31■■□□□ 1.32
CTCF-203ENST00000566078 IGLC2P0DOY2 106 aa23.31■■□□□ 1.32
CTCF-203ENST00000566078 KLF5Q13887 457 aaPredicted RBP23.31■■□□□ 1.32
CTCF-203ENST00000566078 ZNF586Q9NXT0 402 aa23.31■■□□□ 1.32
CTCF-203ENST00000566078 ARL2-SNX15V9GYD0 113 aa23.31■■□□□ 1.32
CTCF-203ENST00000566078 C11orf94C9JXX5 98 aa23.3■■□□□ 1.32
CTCF-203ENST00000566078 ATP5G3P48201 142 aa23.3■■□□□ 1.32
CTCF-203ENST00000566078 SMDT1Q9H4I9 107 aa23.3■■□□□ 1.32
CTCF-203ENST00000566078 EDN2P20800 178 aa23.3■■□□□ 1.32
CTCF-203ENST00000566078 NSUN5P1Q3KNT7 163 aa23.3■■□□□ 1.32
CTCF-203ENST00000566078 C16orf54Q6UWD8 224 aa23.3■■□□□ 1.32
CTCF-203ENST00000566078 GPR82Q96P67 336 aa23.3■■□□□ 1.32
CTCF-203ENST00000566078 A0A1W2PS18 150 aa23.29■■□□□ 1.32
CTCF-203ENST00000566078 TMEM213A2RRL7 107 aa23.29■■□□□ 1.32
CTCF-203ENST00000566078 ADARB2-AS1A8MUL3 147 aa23.29■■□□□ 1.32
CTCF-203ENST00000566078 CD81P60033 236 aa23.29■■□□□ 1.32
CTCF-203ENST00000566078 GRAMD2BQ96HH9 432 aa23.29■■□□□ 1.32
CTCF-203ENST00000566078 ATF4P18848 351 aaPredicted RBP23.28■■□□□ 1.32
CTCF-203ENST00000566078 FHL3Q13643 280 aa23.28■■□□□ 1.32
CTCF-203ENST00000566078 AWAT1Q58HT5 328 aa23.28■■□□□ 1.32
CTCF-203ENST00000566078 A0A1W2PRE2 83 aa23.27■■□□□ 1.32
CTCF-203ENST00000566078 CCL24O00175 119 aa23.27■■□□□ 1.32
CTCF-203ENST00000566078 SRP19P09132 144 aaKnown RBP23.27■■□□□ 1.32
CTCF-203ENST00000566078 GALR1P47211 349 aa23.27■■□□□ 1.32
CTCF-203ENST00000566078 RHPN1-AS1Q9BWJ2 59 aa23.27■■□□□ 1.32
CTCF-203ENST00000566078 SMPXQ9UHP9 88 aa23.27■■□□□ 1.32
CTCF-203ENST00000566078 SMAD5-AS1Q9Y6J3 95 aa23.27■■□□□ 1.32
CTCF-203ENST00000566078 SFTA3P0C7M3 94 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 PRIMA1Q86XR5 153 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 NDUFA11Q86Y39 141 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 GLMPQ8WWB7 406 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 C17orf77Q96MU5 243 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 TXNDC17Q9BRA2 123 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 TRBV19A0A075B6N1 114 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 GGTLC3B5MD39 225 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 KRTAP24-1Q3LI83 254 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 SIGLEC15Q6ZMC9 328 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 SLC35B3Q9H1N7 401 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 WNK1Q9H4A3 2382 aa23.26■■□□□ 1.31
CTCF-203ENST00000566078 TMEM218A2RU14 115 aa23.25■■□□□ 1.31
CTCF-203ENST00000566078 CHEK1O14757 476 aa23.25■■□□□ 1.31
CTCF-203ENST00000566078 RANP62826 216 aaKnown RBP23.25■■□□□ 1.31
CTCF-203ENST00000566078 DLX4Q92988 240 aaPredicted RBP23.25■■□□□ 1.31
CTCF-203ENST00000566078 CEBPGP53567 150 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms