RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 RAP2BP61225 183 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 RRAS2P62070 204 aaPredicted RBP10.14□□□□□ -0.79
SMPD3-204ENST00000563396 ARL16Q0P5N6 197 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 ASAH1Q13510 395 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 LGALS9CQ6DKI2 356 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 TEPPQ6URK8 271 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 ZNF546Q86UE3 836 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 S100ZQ8WXG8 99 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 C20orf173Q96LM9 149 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 LINC00052Q96N35 136 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 RPRMQ9NS64 109 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 GSKIPQ9P0R6 139 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 MGAT4CQ9UBM8 478 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 HIGD1AQ9Y241 93 aa10.14□□□□□ -0.79
SMPD3-204ENST00000563396 A0A087X0K7 114 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 H2AFB2P0C5Z0 115 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 RPL7P18124 248 aaKnown RBP10.13□□□□□ -0.79
SMPD3-204ENST00000563396 SLC38A11Q08AI6 406 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 ZNF846Q147U1 533 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 PXDC1Q5TGL8 231 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 C2CD4CQ8TF44 421 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 C16orf92Q96LL3 132 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 DOK5Q9P104 306 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 CELA1Q9UNI1 258 aa10.13□□□□□ -0.79
SMPD3-204ENST00000563396 BIRC6Q9NR09 4857 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 TRAV8-2A0A0B4J237 113 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 F6UB75 175 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 MRPS12O15235 138 aaKnown RBP10.12□□□□□ -0.79
SMPD3-204ENST00000563396 HYPMO75409 117 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 DEDDO75618 318 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 HLA-DMBP28068 263 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 IL15RAQ13261 267 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 FAM78BQ5VT40 261 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 EBLN2Q6P2I7 272 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 AMTNQ6UX39 209 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 GSG1LQ6UXU4 331 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 Q6ZTC4 211 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 S100A7AQ86SG5 101 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 C12orf45Q8N5I9 185 aaPredicted RBP10.12□□□□□ -0.79
SMPD3-204ENST00000563396 UHRF2Q96PU4 802 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 RSG1Q9BU20 258 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 SLC35B3Q9H1N7 401 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 VPS13DQ5THJ4 4388 aa10.12□□□□□ -0.79
SMPD3-204ENST00000563396 TRAV10A0A0B4J240 114 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 FAM240BA0A1B0GVZ2 78 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 SMIM9A6NGZ8 99 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 A6NHS1 94 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 IGKV3-20P01619 116 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 PSG9Q00887 426 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 PATE2Q6UY27 113 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 OR4B1Q8NGF8 309 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 C2orf50Q96LR7 162 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 MGST2Q99735 147 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 ARV1Q9H2C2 271 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 PTTG2Q9NZH5 202 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 RNF24Q9Y225 148 aa10.11□□□□□ -0.79
SMPD3-204ENST00000563396 TMEM189A5PLL7 270 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 L7N2F9 121 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 AGPAT2O15120 278 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 UPK1BO75841 260 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 AMBPP02760 352 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 OR5G3P0C626 314 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 CXCL2P19875 107 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 VAMP2P63027 116 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 VWC2Q2TAL6 325 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 MZT2BQ6NZ67 158 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 ARL6Q9H0F7 186 aa10.1□□□□□ -0.79
SMPD3-204ENST00000563396 LYRM2Q9NU23 88 aaPredicted RBP10.1□□□□□ -0.79
SMPD3-204ENST00000563396 LSM5Q9Y4Y9 91 aaKnown RBP10.1□□□□□ -0.79
SMPD3-204ENST00000563396 C5orf51A6NDU8 294 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 FAM25EA8MYX2 175 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 CXCL3P19876 107 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 FXYD7P58549 80 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 C12orf74Q32Q52 190 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 C1orf158Q8N1D5 194 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 APLNQ9ULZ1 77 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 FRAS1Q86XX4 4008 aa10.09□□□□□ -0.79
SMPD3-204ENST00000563396 TEX48A0A1B0GUV7 120 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 GOSR2O14653 212 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 DUSP14O95147 198 aaKnown RBP10.08□□□□□ -0.8
SMPD3-204ENST00000563396 PVALBP20472 110 aaPredicted RBP10.08□□□□□ -0.8
SMPD3-204ENST00000563396 CAV2P51636 162 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 CNN1P51911 297 aaKnown RBP10.08□□□□□ -0.8
SMPD3-204ENST00000563396 PRR20EP86478 221 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 PRR20CP86479 221 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 PRR20DP86480 221 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 PRR20BP86481 221 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 PRR20AP86496 221 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 RNF182Q8N6D2 247 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 IGF2BP2-AS1Q96M15 143 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 WDR83OSQ9Y284 106 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 GOLT1BQ9Y3E0 138 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 RFNGQ9Y644 331 aa10.08□□□□□ -0.8
SMPD3-204ENST00000563396 DNAH6Q9C0G6 4158 aa10.07□□□□□ -0.8
SMPD3-204ENST00000563396 CRXO43186 299 aaPredicted RBP10.07□□□□□ -0.8
SMPD3-204ENST00000563396 SULT1A1P50225 295 aa10.07□□□□□ -0.8
SMPD3-204ENST00000563396 IFITM3Q01628 133 aa10.07□□□□□ -0.8
SMPD3-204ENST00000563396 RAB32Q13637 225 aa10.07□□□□□ -0.8
SMPD3-204ENST00000563396 LCN15Q6UWW0 184 aa10.07□□□□□ -0.8
SMPD3-204ENST00000563396 LINC00305Q7Z4B0 112 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms