RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 OPCMLQ14982 345 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 TMEM182Q6ZP80 229 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 TRPT1Q86TN4 253 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 FAM24BQ8N5W8 94 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 OR5C1Q8NGR4 320 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 THAP6Q8TBB0 222 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 SCRT1Q9BWW7 348 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 OR5AC2Q9NZP5 309 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 DNAH9Q9NYC9 4486 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 A0A087X0K7 114 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 SOCS3O14543 225 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 SPRY2O43597 315 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 FGF7P21781 194 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 B2MP61769 119 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 PRR20EP86478 221 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 PRR20CP86479 221 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 PRR20DP86480 221 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 PRR20BP86481 221 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 PRR20AP86496 221 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 C10orf113Q5VZT2 155 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 FOXI2Q6ZQN5 318 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 RNF183Q96D59 192 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 C16orf92Q96LL3 132 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 C1QTNF4Q9BXJ3 329 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 EDA2RQ9HAV5 297 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 MBD2Q9UBB5 411 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 STAB2Q8WWQ8 2551 aa10.6□□□□□ -0.71
CCDC88C-207ENST00000554051 C17orf112F2Z3M2 114 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 CA1P00915 261 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 HLA-DRB4P13762 266 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 DEFB135Q30KP9 77 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 ACTL10Q5JWF8 245 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 LINC00305Q7Z4B0 112 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 BPIFA4PQ86YQ2 179 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 ZNF709Q8N972 641 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 MUC7Q8TAX7 377 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 ATP5SQ99766 215 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 OVOL2Q9BRP0 275 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 NPCDR1Q9BY65 106 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 RETNQ9HD89 108 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 RPRMQ9NS64 109 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 SLC39A9Q9NUM3 307 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 HLA-DRB4X5D2U9 266 aa10.59□□□□□ -0.71
CCDC88C-207ENST00000554051 H0YIZ8 118 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 GIPP09681 153 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 LYL1P12980 280 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 OXA1LQ15070 435 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 ZNF124Q15973 351 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 EBLN2Q6P2I7 272 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 LCN15Q6UWW0 184 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 CLUHP3Q96NS8 147 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 UHRF2Q96PU4 802 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 RSG1Q9BU20 258 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 DNAJC4Q9NNZ3 241 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 CLEC5AQ9NY25 188 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 HSPB11Q9Y547 144 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 PXMP4Q9Y6I8 212 aa10.58□□□□□ -0.72
CCDC88C-207ENST00000554051 RPL12P30050 165 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 NHLH2Q02577 135 aa10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 CLINT1Q14677 625 aa10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 GUK1Q16774 197 aa10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 MIC13Q5XKP0 118 aa10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 LINC00052Q96N35 136 aa10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 SLC50A1Q9BRV3 221 aa10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 PARD6GQ9BYG4 376 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 SAV1Q9H4B6 383 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-207ENST00000554051 KNCNA6PVL3 124 aa10.56□□□□□ -0.72
CCDC88C-207ENST00000554051 IFNA5P01569 189 aa10.56□□□□□ -0.72
CCDC88C-207ENST00000554051 CXCL3P19876 107 aa10.56□□□□□ -0.72
CCDC88C-207ENST00000554051 FCN2Q15485 313 aa10.56□□□□□ -0.72
CCDC88C-207ENST00000554051 RNF126Q9BV68 326 aa10.56□□□□□ -0.72
CCDC88C-207ENST00000554051 WDR61Q9GZS3 305 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-207ENST00000554051 H3BMM0 161 aa10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 ZNF266Q14584 549 aa10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 PATE2Q6UY27 113 aa10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 OR11H7Q8NGC8 314 aa10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 LRRC20Q8TCA0 184 aa10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 TMEM37Q8WXS4 190 aa10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 MRPL32Q9BYC8 188 aaKnown RBP10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 COL7A1Q02388 2944 aa10.55□□□□□ -0.72
CCDC88C-207ENST00000554051 DUSP14O95147 198 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-207ENST00000554051 SCGB1C1Q8TD33 95 aa10.54□□□□□ -0.72
CCDC88C-207ENST00000554051 C11orf68Q9H3H3 251 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-207ENST00000554051 ZNF253O75346 499 aa10.53□□□□□ -0.72
CCDC88C-207ENST00000554051 AMBPP02760 352 aa10.53□□□□□ -0.72
CCDC88C-207ENST00000554051 AQP10Q96PS8 301 aa10.53□□□□□ -0.72
CCDC88C-207ENST00000554051 RARRES2Q99969 163 aa10.53□□□□□ -0.72
CCDC88C-207ENST00000554051 HRH4Q9H3N8 390 aa10.53□□□□□ -0.72
CCDC88C-207ENST00000554051 TMEM14CQ9P0S9 112 aa10.53□□□□□ -0.72
CCDC88C-207ENST00000554051 A0A0J9YX75 114 aa10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 MRPS12O15235 138 aaKnown RBP10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 MIFP14174 115 aa10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 C4BPBP20851 252 aa10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 PDE6HQ13956 83 aa10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 INO80EQ8NBZ0 244 aaPredicted RBP10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 ZNF738Q8NE65 137 aa10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 OR11H2Q8NH07 326 aa10.52□□□□□ -0.73
CCDC88C-207ENST00000554051 IGLC2P0DOY2 106 aa10.51□□□□□ -0.73
CCDC88C-207ENST00000554051 ZNF331Q9NQX6 463 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms